package biocaml

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package biocaml
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Module Sam.FlagsSource

Alignment Types

Sourcetype t = private int

Flags are represented as a "bit map".

include Sexplib0.Sexpable.S with type t := t
Sourceval t_of_sexp : Sexplib0.Sexp.t -> t
Sourceval sexp_of_t : t -> Sexplib0.Sexp.t
Sourceval of_int : int -> t Core.Or_error.t
Sourceval has_multiple_segments : t -> bool
Sourceval each_segment_properly_aligned : t -> bool
Sourceval segment_unmapped : t -> bool
Sourceval next_segment_unmapped : t -> bool
Sourceval seq_is_reverse_complemented : t -> bool
Sourceval next_seq_is_reverse_complemented : t -> bool
Sourceval first_segment : t -> bool
Sourceval last_segment : t -> bool
Sourceval secondary_alignment : t -> bool
Sourceval not_passing_quality_controls : t -> bool
Sourceval pcr_or_optical_duplicate : t -> bool
Sourceval supplementary_alignment : t -> bool
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