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package sundialsml
sundialsml 2.7.0p0
Error log
The package failed to build. The error log from opam follows.
Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y
The following actions will be performed:
- recompile opam-depext 1.2.3
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved opam-depext.1.2.3 (cached)
-> removed opam-depext.1.2.3
-> installed opam-depext.1.2.3
Done.
<><> opam-depext.1.2.3 installed successfully <><><><><><><><><><><><><><><><><>
=> opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead
# Run eval $(opam env) to update the current shell environment
<><> Carrying on to "opam depext -viy sundialsml.2.7.0p0 ocamlfind.1.9.6 conf-sundials.2"
Since version 2.1, opam now handles external dependencies alongside OCaml ones, and the `depext` plugin interface is provided for backwards compatibility only. Consider using your usual `opam install` command to install both OCaml and system dependencies, or `opam install <pkg> --depext-only` if you want to only install external dependencies.
# Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian
# The following system packages are needed:
libsundials-dev
[NOTE] Package ocamlfind is already installed (current version is 1.9.6).
The following actions will be performed:
- install conf-sundials 2
- install sundialsml 2.7.0p0
===== 2 to install =====
The following system packages will first need to be installed:
libsundials-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "libsundials-dev"
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- Setting up libopenblas0:amd64 (0.3.21+ds-4) ...
- Setting up libklu1:amd64 (1:5.12.0+dfsg-2) ...
- Setting up libccolamd2:amd64 (1:5.12.0+dfsg-2) ...
- Setting up libllvm15:amd64 (1:15.0.6-4+b1) ...
- Setting up cmake (3.25.1-1) ...
- Setting up libhwloc-dev:amd64 (2.9.0-1) ...
- Setting up libfftw3-dev:amd64 (3.3.10-1) ...
- Setting up libcholmod3:amd64 (1:5.12.0+dfsg-2) ...
- Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ...
- Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode
- Setting up libspqr2:amd64 (1:5.12.0+dfsg-2) ...
- Setting up libibverbs1:amd64 (44.0-2) ...
- Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ...
- Setting up libdebuginfod-common (0.188-2.1) ...
- Setting up libpmix2:amd64 (4.2.2-1+deb12u1) ...
- Setting up ibverbs-providers:amd64 (44.0-2) ...
- Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ...
- Setting up libdebuginfod1:amd64 (0.188-2.1) ...
- Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ...
- Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ...
- Setting up gfortran (4:12.2.0-3) ...
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
- Setting up libnl-route-3-dev:amd64 (3.7.0-0.2+b1) ...
- Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ...
- Setting up gdb (13.1-3) ...
- Setting up libumfpack5:amd64 (1:5.12.0+dfsg-2) ...
- Setting up liblapack-dev:amd64 (3.11.0-2) ...
- Setting up libsuperlu-dev:amd64 (5.3.0+dfsg1-2+b1) ...
- Setting up libpmix-dev:amd64 (4.2.2-1+deb12u1) ...
- Setting up librdmacm1:amd64 (44.0-2) ...
- Setting up libucx0:amd64 (1.13.1-1) ...
- Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ...
- Setting up libglx0:amd64 (1.6.0-1) ...
- Setting up libsuitesparse-dev:amd64 (1:5.12.0+dfsg-2) ...
- Setting up libcoarrays-dev:amd64 (2.10.1-1+b1) ...
- Setting up libibverbs-dev:amd64 (44.0-2) ...
- Setting up libgl1:amd64 (1.6.0-1) ...
- Setting up libglx-dev:amd64 (1.6.0-1) ...
- Setting up libgl-dev:amd64 (1.6.0-1) ...
- Setting up libfabric1:amd64 (1.17.0-3) ...
- Setting up libopenmpi3:amd64 (4.1.4-3+b1) ...
- Setting up libfftw3-mpi3:amd64 (3.3.10-1) ...
- Setting up libtrilinos-teuchos-13.2:amd64 (13.2.0-4) ...
- Setting up libcaf-openmpi-3:amd64 (2.10.1-1+b1) ...
- Setting up libtrilinos-epetra-13.2:amd64 (13.2.0-4) ...
- Setting up libtrilinos-aztecoo-13.2:amd64 (13.2.0-4) ...
- Setting up libtrilinos-aztecoo-dev:amd64 (13.2.0-4) ...
- Setting up libtrilinos-triutils-13.2:amd64 (13.2.0-4) ...
- Setting up openmpi-bin (4.1.4-3+b1) ...
- update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
- update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
- Setting up libhdf5-openmpi-103-1:amd64 (1.10.8+repack1-1) ...
- Setting up libptscotch-7.0:amd64 (7.0.3-2) ...
- Setting up libcombblas1.16.0:amd64 (1.6.2-8) ...
- Setting up libsuperlu-dist8:amd64 (8.1.2+dfsg1-1+b1) ...
- Setting up libfftw3-mpi-dev:amd64 (3.3.10-1) ...
- Setting up mpi-default-bin (1.14) ...
- Setting up libcoarrays-openmpi-dev:amd64 (2.10.1-1+b1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/open-coarrays/openmpi/bin/caf to provide /usr/bin/caf.openmpi (caf-openmpi) in auto mode
- update-alternatives: using /usr/bin/caf.openmpi to provide /usr/bin/caf (caf) in auto mode
- Setting up libtrilinos-zoltan-13.2:amd64 (13.2.0-4) ...
- Setting up libsuperlu-dist-dev:amd64 (8.1.2+dfsg1-1+b1) ...
- Setting up libhdf5-openmpi-fortran-102:amd64 (1.10.8+repack1-1) ...
- Setting up libtrilinos-zoltan-dev:amd64 (13.2.0-4) ...
- Setting up libtrilinos-epetraext-13.2:amd64 (13.2.0-4) ...
- Setting up libtrilinos-galeri-13.2:amd64 (13.2.0-4) ...
- Setting up libsundials-nvecparallel-mpi6:amd64 (6.4.1+dfsg1-3) ...
- Setting up libhdf5-openmpi-hl-100:amd64 (1.10.8+repack1-1) ...
- Setting up libopenmpi-dev:amd64 (4.1.4-3+b1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode
- Setting up libhdf5-openmpi-cpp-103-1:amd64 (1.10.8+repack1-1) ...
- Setting up libhdf5-openmpi-hl-cpp-100:amd64 (1.10.8+repack1-1) ...
- Setting up libscalapack-openmpi2.2:amd64 (2.2.1-2+b1) ...
- Setting up libhdf5-openmpi-hl-fortran-100:amd64 (1.10.8+repack1-1) ...
- Setting up libhypre-2.26.0:amd64 (2.26.0-3) ...
- Setting up libsundials-nvecparallel-hypre6:amd64 (6.4.1+dfsg1-3) ...
- Setting up libmumps-5.5:amd64 (5.5.1-1) ...
- Setting up libscalapack-openmpi-dev:amd64 (2.2.1-2+b1) ...
- Setting up mpi-default-dev (1.14) ...
- Setting up libtrilinos-amesos-13.2:amd64 (13.2.0-4) ...
- Setting up libscalapack-mpi-dev:amd64 (2.2.1-2+b1) ...
- Setting up libhdf5-openmpi-dev (1.10.8+repack1-1) ...
- update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
- update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links
- update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
- Setting up libmumps-dev:amd64 (5.5.1-1) ...
- Setting up libscotch-dev (7.0.3-2) ...
- Setting up libhypre-dev:amd64 (2.26.0-3) ...
- Setting up libptscotch-dev (7.0.3-2) ...
- Setting up libtrilinos-ifpack-13.2:amd64 (13.2.0-4) ...
- Setting up libhdf5-mpi-dev (1.10.8+repack1-1) ...
- Setting up libpetsc3.18-dev-common (3.18.5+dfsg1-1) ...
- Setting up libtrilinos-ml-13.2:amd64 (13.2.0-4) ...
- Setting up libtrilinos-ml-dev:amd64 (13.2.0-4) ...
- Setting up libpetsc-real3.18:amd64 (3.18.5+dfsg1-1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.18.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.18 (libpetsc.so.3.18) in auto mode
- Setting up libsundials-nvecparallel-petsc6:amd64 (6.4.1+dfsg1-3) ...
- Setting up libpetsc-real3.18-dev:amd64 (3.18.5+dfsg1-1) ...
- update-alternatives: error: no alternatives for petsc
- update-alternatives: using /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.18.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode
- update-alternatives: using /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.18 (petsc3.18) in auto mode
- Setting up libsundials-sunlinsol3:amd64 (6.4.1+dfsg1-3) ...
- Setting up libpetsc-real-dev (3.18.5+dfsg1-1) ...
- Setting up petsc-dev (3.18.5+dfsg1-1) ...
- Setting up libsundials-dev (6.4.1+dfsg1-3) ...
- Processing triggers for libc-bin (2.36-9+deb12u8) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved conf-sundials.2 (cached)
Processing 2/6: [sundialsml.2.7.0p0: http]
Processing 3/6: [sundialsml.2.7.0p0: http] [conf-sundials: cc test.c]
Processing 3/6: [conf-sundials: cc test.c]
- # 0 "test.c"
- # 0 "<built-in>"
- # 0 "<command-line>"
- # 1 "/usr/include/stdc-predef.h" 1 3 4
- # 0 "<command-line>" 2
- # 1 "test.c"
- # 1 "/usr/include/sundials/sundials_config.h" 1 3 4
- # 20 "/usr/include/sundials/sundials_config.h" 3 4
- # 1 "/usr/include/sundials/sundials_export.h" 1 3 4
- # 21 "/usr/include/sundials/sundials_config.h" 2 3 4
- # 2 "test.c" 2
-> compiled conf-sundials.2
Processing 3/6:
-> installed conf-sundials.2
Processing 4/6:
-> retrieved sundialsml.2.7.0p0 (https://github.com/inria-parkas/sundialsml/archive/v2.7.0p0.zip)
Processing 5/6: [sundialsml: ./configure]
+ /home/opam/.opam/4.13/.opam-switch/build/sundialsml.2.7.0p0/./configure "--stubdir=/home/opam/.opam/4.13/lib/stublibs/" "--libdir=/home/opam/.opam/4.13/lib/" "--docdir=/home/opam/.opam/4.13/doc/" (CWD=/home/opam/.opam/4.13/.opam-switch/build/sundialsml.2.7.0p0)
-
- Configuration (2.7.0p0)
- -----------------------
- OCaml /home/opam/.opam/4.13/lib/ocaml (4.13.1)
- Sundials UNKNOWN (without lapack)
- -parallel not installed
- -nvector: pthreads not available
- -nvector: openmp not available
- -SuperLU_MT not available
- -KLU not available
- -examples NOT FOUND
- OCamlMPI NOT FOUND
- MathJax (for docs) https://cdn.mathjax.org/mathjax/latest/ (rendering needs network)
-
- Architecture x86_64
-
- Installation paths
- prefix: /usr/local/
- libdir: /home/opam/.opam/4.13/lib/
- stubdir: /home/opam/.opam/4.13/lib/stublibs/
- docdir: /home/opam/.opam/4.13/doc/
-
- Some errors occurred during configuration:
- could not find sundials_config.h
-
[ERROR] The compilation of sundialsml.2.7.0p0 failed at "./configure --stubdir=/home/opam/.opam/4.13/lib/stublibs/ --libdir=/home/opam/.opam/4.13/lib/ --docdir=/home/opam/.opam/4.13/doc/".
#=== ERROR while compiling sundialsml.2.7.0p0 =================================#
# context 2.1.6 | linux/x86_64 | ocaml-base-compiler.4.13.1 | file:///src
# path ~/.opam/4.13/.opam-switch/build/sundialsml.2.7.0p0
# command ~/.opam/4.13/.opam-switch/build/sundialsml.2.7.0p0/./configure --stubdir=/home/opam/.opam/4.13/lib/stublibs/ --libdir=/home/opam/.opam/4.13/lib/ --docdir=/home/opam/.opam/4.13/doc/
# exit-code 1
# env-file ~/.opam/log/sundialsml-115-e2d2f8.env
# output-file ~/.opam/log/sundialsml-115-e2d2f8.out
### output ###
#
# Configuration (2.7.0p0)
# -----------------------
# OCaml /home/opam/.opam/4.13/lib/ocaml (4.13.1)
# Sundials UNKNOWN (without lapack)
# -parallel not installed
# -nvector: pthreads not available
# -nvector: openmp not available
# -SuperLU_MT not available
# -KLU not available
# -examples NOT FOUND
# OCamlMPI NOT FOUND
# MathJax (for docs) https://cdn.mathjax.org/mathjax/latest/ (rendering needs network)
#
# Architecture x86_64
#
# Installation paths
# prefix: /usr/local/
# libdir: /home/opam/.opam/4.13/lib/
# stubdir: /home/opam/.opam/4.13/lib/stublibs/
# docdir: /home/opam/.opam/4.13/doc/
#
# Some errors occurred during configuration:
# could not find sundials_config.h
#
<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - build sundialsml 2.7.0p0
+-
+- The following changes have been performed
| - install conf-sundials 2
+-
# Run eval $(opam env) to update the current shell environment
The former state can be restored with:
/usr/bin/opam switch import "/home/opam/.opam/4.13/.opam-switch/backup/state-20240912212706.export"
'opam --cli=2.1 install sundialsml.2.7.0p0 ocamlfind.1.9.6 conf-sundials.2 --verbose --yes --confirm-level=unsafe-yes' failed.
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