package phylogenetics

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package phylogenetics
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Module Site_evolution_model.JC69Source

Jukes-Cantor model with analytical diagonalization of transition matrix.

include S with type vec := Nucleotide.vector with type mat := Nucleotide.matrix with type param = unit
Sourcetype param = unit
Sourceval rate_matrix : param -> Nucleotide.matrix
Sourceval transition_probability_matrix : param -> float -> Nucleotide.matrix
Sourceval stationary_distribution : param -> Nucleotide.vector
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