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package ocaml-r
ocaml-r 0.1.1
Error log
The package failed to build. The error log from opam follows.
Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y
The following actions will be performed:
- recompile opam-depext 1.2.3
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved opam-depext.1.2.3 (cached)
-> removed opam-depext.1.2.3
-> installed opam-depext.1.2.3
Done.
<><> opam-depext.1.2.3 installed successfully <><><><><><><><><><><><><><><><><>
=> opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead
# Run eval $(opam env) to update the current shell environment
<><> Carrying on to "opam depext -viy ocaml-r.0.1.1 stdio.v0.13.0 sexplib0.v0.13.0 jbuilder.1.0+beta20.2 dune-configurator.3.16.0 dune.3.16.0 csexp.1.5.2 configurator.v0.11.0 conf-r-mathlib.1 conf-r.1.0.0 conf-pkg-config.3 base.v0.13.2"
Since version 2.1, opam now handles external dependencies alongside OCaml ones, and the `depext` plugin interface is provided for backwards compatibility only. Consider using your usual `opam install` command to install both OCaml and system dependencies, or `opam install <pkg> --depext-only` if you want to only install external dependencies.
# Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian
# The following system packages are needed:
pkg-config
r-base-core
r-mathlib
[NOTE] Package dune is already installed (current version is 3.16.0).
The following actions will be performed:
- install conf-r 1.0.0
- install jbuilder 1.0+beta20.2
- install csexp 1.5.2
- install conf-pkg-config 3
- install sexplib0 v0.13.0
- install dune-configurator 3.16.0
- install conf-r-mathlib 1
- install base v0.13.2
- install stdio v0.13.0
- install configurator v0.11.0
- install ocaml-r 0.1.1
===== 11 to install =====
The following system packages will first need to be installed:
pkg-config r-base-core r-mathlib
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "pkg-config" "r-base-core" "r-mathlib"
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- Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-2) ...
- Setting up libxfixes3:amd64 (1:6.0.0-2) ...
- Setting up libxcb-sync1:amd64 (1.15-1) ...
- Setting up libipc-system-simple-perl (1.30-2) ...
- Setting up libxml-xpathengine-perl (0.14-2) ...
- Setting up libncurses6:amd64 (6.4-4) ...
- Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ...
- Setting up libfribidi0:amd64 (1.0.8-2.1) ...
- Setting up libxinerama1:amd64 (2:1.1.4-3) ...
- Setting up libxv1:amd64 (2:1.0.11-1.1) ...
- Setting up libpcre32-3:amd64 (2:8.39-15) ...
- Setting up libio-html-perl (1.004-3) ...
- Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ...
- Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ...
- Setting up icu-devtools (72.1-3) ...
- Setting up pkgconf-bin (1.8.1-1) ...
- Setting up libsensors5:amd64 (1:3.6.0-7.1) ...
- Setting up libglapi-mesa:amd64 (22.3.6-1+deb12u1) ...
- Setting up libgfortran5:amd64 (12.2.0-14) ...
- Setting up libtimedate-perl (2.3300-2) ...
- Setting up libregexp-ipv6-perl (0.03-3) ...
- Setting up liblzma-dev:amd64 (5.4.1-0.2) ...
- Setting up libxcb-dri2-0:amd64 (1.15-1) ...
- Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ...
- Setting up libpcre2-posix3:amd64 (10.42-1) ...
- Setting up sensible-utils (0.0.17+nmu1) ...
- Setting up libxshmfence1:amd64 (1.3-1) ...
- Setting up libxcb-randr0:amd64 (1.15-1) ...
- Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ...
- Setting up r-mathlib (4.2.2.20221110-2) ...
- Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ...
- Setting up libthai-data (0.1.29-1) ...
- Setting up libxss1:amd64 (1:1.2.3-1) ...
- Setting up libxkbfile1:amd64 (1:1.1.0-1) ...
- Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ...
- Setting up libdrm-common (2.4.114-1) ...
- Setting up libelf1:amd64 (0.188-2.1) ...
- Setting up libxcomposite1:amd64 (1:0.4.5-1) ...
- Setting up libicu-dev:amd64 (72.1-3) ...
- Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ...
- Setting up xdg-utils (1.1.3-4.1) ...
- update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
- Setting up liburi-perl (5.17-1) ...
- Setting up dbus-bin (1.14.10-1~deb12u1) ...
- Setting up libx11-protocol-perl (0.56-9) ...
- Setting up libblas-dev:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- Setting up libbz2-dev:amd64 (1.0.8-5+b1) ...
- Setting up libwayland-client0:amd64 (1.21.0-1) ...
- Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ...
- Setting up libpcrecpp0v5:amd64 (2:8.39-15) ...
- Setting up libice6:amd64 (2:1.0.10-1) ...
- Setting up libhttp-date-perl (6.05-2) ...
- Setting up liblapack3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libxft2:amd64 (2.3.6-1) ...
- Setting up libncurses-dev:amd64 (6.4-4) ...
- Setting up libfile-basedir-perl (0.09-2) ...
- Setting up libfile-listing-perl (6.15-1) ...
- Setting up libpcre2-dev:amd64 (10.42-1) ...
- Setting up libpcre3-dev:amd64 (2:8.39-15) ...
- Setting up libxtst6:amd64 (2:1.2.3-1.1) ...
- Setting up libtk8.6:amd64 (8.6.13-2) ...
- Setting up libxcursor1:amd64 (1:1.2.1-1) ...
- Setting up libpng-dev:amd64 (1.6.39-2) ...
- Setting up libjpeg-dev:amd64 (1:2.1.5-2) ...
- Setting up libnet-http-perl (6.22-1) ...
- Setting up libgfortran-12-dev:amd64 (12.2.0-14) ...
- Setting up dbus-daemon (1.14.10-1~deb12u1) ...
- Setting up libreadline-dev:amd64 (8.2-1.3) ...
- Setting up pkgconf:amd64 (1.8.1-1) ...
- Setting up libthai0:amd64 (0.1.29-1) ...
- Setting up gfortran-12 (12.2.0-14) ...
- Setting up dbus (1.14.10-1~deb12u1) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up shared-mime-info (2.2-1) ...
- Setting up liblapack-dev:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- Setting up pkg-config:amd64 (1.8.1-1) ...
- Setting up ucf (3.0043+nmu1) ...
- Setting up libfile-desktopentry-perl (0.22-3) ...
- Setting up libwww-robotrules-perl (6.02-1) ...
- Setting up libdrm2:amd64 (2.4.114-1+b1) ...
- Setting up libhtml-parser-perl:amd64 (3.81-1) ...
- Setting up libllvm15:amd64 (1:15.0.6-4+b1) ...
- Setting up libncurses5-dev:amd64 (6.4-4) ...
- Setting up libsm6:amd64 (2:1.2.3-1) ...
- Setting up libio-socket-ssl-perl (2.081-2) ...
- Setting up libhttp-message-perl (6.44-1) ...
- Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ...
- Setting up libhtml-form-perl (6.11-1) ...
- Setting up libfile-mimeinfo-perl (0.33-1) ...
- Setting up libpaper1:amd64 (1.1.29) ...
-
- Creating config file /etc/papersize with new version
- Setting up libhttp-negotiate-perl (6.01-2) ...
- Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ...
- Setting up libgbm1:amd64 (22.3.6-1+deb12u1) ...
- Setting up libhttp-cookies-perl (6.10-1) ...
- Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ...
- Setting up libhtml-tree-perl (5.07-3) ...
- Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ...
- Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ...
- Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ...
- Setting up libhtml-format-perl (2.16-2) ...
- Setting up libpaper-utils (1.1.29) ...
- Setting up gfortran (4:12.2.0-3) ...
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
- Setting up libegl-mesa0:amd64 (22.3.6-1+deb12u1) ...
- Setting up libnet-smtp-ssl-perl (1.04-2) ...
- Setting up libmailtools-perl (2.21-2) ...
- Setting up libxt6:amd64 (1:1.2.1-1.1) ...
- Setting up libhttp-daemon-perl (6.16-1) ...
- Setting up libegl1:amd64 (1.6.0-1) ...
- Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ...
- Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ...
- Setting up libxmu6:amd64 (2:1.1.3-3) ...
- Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ...
- Setting up libglx0:amd64 (1.6.0-1) ...
- Setting up libxaw7:amd64 (2:1.0.14-1) ...
- Setting up x11-xserver-utils (7.7+9+b1) ...
- Setting up libgl1:amd64 (1.6.0-1) ...
- Setting up r-base-core (4.2.2.20221110-2) ...
-
- Creating config file /etc/R/Renviron with new version
- Setting up r-cran-lattice (0.20-45-3) ...
- Setting up r-cran-nlme (3.1.162-1) ...
- Setting up zutty (0.14.0.20230218+dfsg1-1) ...
- update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
- Setting up r-cran-cluster (2.1.4-1) ...
- Setting up x11-utils (7.7+5) ...
- Setting up r-cran-nnet (7.3-18-1) ...
- Setting up r-cran-codetools (0.2-19-1) ...
- Setting up r-cran-boot (1.3-28.1-1) ...
- Setting up r-base-dev (4.2.2.20221110-2) ...
- Setting up r-cran-spatial (7.3-16-1) ...
- Setting up r-cran-mass (7.3-58.2-1) ...
- Setting up r-cran-foreign (0.8.84-1) ...
- Setting up r-cran-matrix (1.5-3-1) ...
- Setting up r-cran-kernsmooth (2.23-20-1) ...
- Setting up r-cran-mgcv (1.8-41-1) ...
- Setting up r-cran-class (7.3-21-1) ...
- Setting up r-cran-survival (3.5-3-1) ...
- Setting up r-cran-rpart (4.1.19-1) ...
- Setting up r-recommended (4.2.2.20221110-2) ...
- Setting up liblwp-protocol-https-perl (6.10-1) ...
- Setting up libwww-perl (6.68-1) ...
- Setting up libxml-parser-perl (2.46-4) ...
- Setting up libxml-twig-perl (1:3.52-2) ...
- Setting up libnet-dbus-perl (1.2.0-2) ...
- Processing triggers for libc-bin (2.36-9+deb12u8) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/33:
Processing 2/33:
-> retrieved conf-r.1.0.0 (cached)
Processing 3/33:
Processing 4/33:
Processing 5/33:
Processing 6/33:
Processing 7/33: [conf-pkg-config: pkg-config]
Processing 8/33: [conf-pkg-config: pkg-config] [conf-r: R CMD]
-> retrieved base.v0.13.2 (cached)
Processing 9/33: [conf-pkg-config: pkg-config] [conf-r: R CMD]
-> retrieved configurator.v0.11.0 (cached)
Processing 10/33: [conf-pkg-config: pkg-config] [conf-r: R CMD]
-> retrieved csexp.1.5.2 (cached)
Processing 11/33: [ocaml-r.0.1.1: http] [conf-pkg-config: pkg-config] [conf-r: R CMD]
Processing 12/33: [ocaml-r.0.1.1: http] [conf-pkg-config: pkg-config] [conf-r: R CMD] [csexp: dune build]
- usage: pkgconf [OPTIONS] [LIBRARIES]
-
- basic options:
-
- --help this message
- --about print pkgconf version and license to stdout
- --version print supported pkg-config version to stdout
- --atleast-pkgconfig-version check whether or not pkgconf is compatible
- with a specified pkg-config version
- --errors-to-stdout print all errors on stdout instead of stderr
- --print-errors ensure all errors are printed
- --short-errors be less verbose about some errors
- --silence-errors explicitly be silent about errors
- --list-all list all known packages
- --list-package-names list all known package names
- --simulate simulate walking the calculated dependency graph
- --no-cache do not cache already seen packages when
- walking the dependency graph
- --log-file=filename write an audit log to a specified file
- --with-path=path adds a directory to the search path
- --define-prefix override the prefix variable with one that is guessed based on
- the location of the .pc file
- --dont-define-prefix do not override the prefix variable under any circumstances
- --prefix-variable=varname sets the name of the variable that pkgconf considers
- to be the package prefix
- --relocate=path relocates a path and exits (mostly for testsuite)
- --dont-relocate-paths disables path relocation support
-
- cross-compilation personality support:
-
- --personality=triplet|filename sets the personality to 'triplet' or a file named 'filename'
- --dump-personality dumps details concerning selected personality
-
- checking specific pkg-config database entries:
-
- --atleast-version require a specific version of a module
- --exact-version require an exact version of a module
- --max-version require a maximum version of a module
- --exists check whether or not a module exists
- --uninstalled check whether or not an uninstalled module will be used
- --no-uninstalled never use uninstalled modules when satisfying dependencies
- --no-provides do not use 'provides' rules to resolve dependencies
- --maximum-traverse-depth maximum allowed depth for dependency graph
- --static be more aggressive when computing dependency graph
- (for static linking)
- --shared use a simplified dependency graph (usually default)
- --pure optimize a static dependency graph as if it were a normal
- dependency graph
- --env-only look only for package entries in PKG_CONFIG_PATH
- --ignore-conflicts ignore 'conflicts' rules in modules
- --validate validate specific .pc files for correctness
-
- querying specific pkg-config database fields:
-
- --define-variable=varname=value define variable 'varname' as 'value'
- --variable=varname print specified variable entry to stdout
- --cflags print required CFLAGS to stdout
- --cflags-only-I print required include-dir CFLAGS to stdout
- --cflags-only-other print required non-include-dir CFLAGS to stdout
- --libs print required linker flags to stdout
- --libs-only-L print required LDPATH linker flags to stdout
- --libs-only-l print required LIBNAME linker flags to stdout
- --libs-only-other print required other linker flags to stdout
- --print-requires print required dependency frameworks to stdout
- --print-requires-private print required dependency frameworks for static
- linking to stdout
- --print-provides print provided dependencies to stdout
- --print-variables print all known variables in module to stdout
- --digraph print entire dependency graph in graphviz 'dot' format
- --keep-system-cflags keep -I/usr/include entries in cflags output
- --keep-system-libs keep -L/lib:/lib/i386-linux-gnu:/lib/x86_64-linux-gnu:/lib/x86_64-linux-gnux32:/lib32:/libx32:/usr/lib:/usr/lib/i386-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnux32:/usr/lib32:/usr/libx32 entries in libs output
- --path show the exact filenames for any matching .pc files
- --modversion print the specified module's version to stdout
- --internal-cflags do not filter 'internal' cflags from output
-
- filtering output:
-
- --msvc-syntax print translatable fragments in MSVC syntax
- --fragment-filter=types filter output fragments to the specified types
-
- report bugs to <https://github.com/pkgconf/pkgconf/issues/new>.
-> compiled conf-pkg-config.3
Processing 12/33: [ocaml-r.0.1.1: http] [conf-r: R CMD] [csexp: dune build]
-> installed conf-pkg-config.3
Processing 13/33: [ocaml-r.0.1.1: http] [conf-r: R CMD] [csexp: dune build]
Processing 14/33: [ocaml-r.0.1.1: http] [conf-r: R CMD] [conf-r-mathlib: pkg-config libRmath] [csexp: dune build]
-> compiled conf-r-mathlib.1
Processing 14/33: [ocaml-r.0.1.1: http] [conf-r: R CMD] [csexp: dune build]
-> installed conf-r-mathlib.1
Processing 15/33: [ocaml-r.0.1.1: http] [conf-r: R CMD] [csexp: dune build]
-> retrieved jbuilder.1.0+beta20.2 (cached)
Processing 16/33: [ocaml-r.0.1.1: http] [conf-r: R CMD] [csexp: dune build]
Processing 17/33: [ocaml-r.0.1.1: http] [conf-r: R CMD] [csexp: dune build] [jbuilder: ocaml configure.ml]
-> retrieved sexplib0.v0.13.0 (cached)
Processing 18/33: [ocaml-r.0.1.1: http] [conf-r: R CMD] [csexp: dune build] [jbuilder: ocaml configure.ml]
Processing 19/33: [ocaml-r.0.1.1: http] [conf-r: R CMD] [csexp: dune build] [jbuilder: ocaml configure.ml] [sexplib0: dune build]
-> compiled conf-r.1.0.0
Processing 19/33: [ocaml-r.0.1.1: http] [csexp: dune build] [jbuilder: ocaml configure.ml] [sexplib0: dune build]
-> installed conf-r.1.0.0
Processing 20/33: [ocaml-r.0.1.1: http] [csexp: dune build] [jbuilder: ocaml configure.ml] [sexplib0: dune build]
-> retrieved stdio.v0.13.0 (cached)
-> compiled csexp.1.5.2
Processing 20/33: [ocaml-r.0.1.1: http] [jbuilder: ocaml configure.ml] [sexplib0: dune build]
-> installed csexp.1.5.2
Processing 21/33: [ocaml-r.0.1.1: http] [jbuilder: ocaml configure.ml] [sexplib0: dune build]
Processing 21/33: [ocaml-r.0.1.1: http] [jbuilder: ocaml bootstrap.ml] [sexplib0: dune build]
Processing 21/33: [jbuilder: ocaml bootstrap.ml] [sexplib0: dune build]
-> retrieved ocaml-r.0.1.1 (https://github.com/pveber/ocaml-r/archive/v0.1.1.tar.gz)
-> compiled sexplib0.v0.13.0
Processing 21/33: [jbuilder: ocaml bootstrap.ml]
-> installed sexplib0.v0.13.0
Processing 22/33: [jbuilder: ocaml bootstrap.ml]
-> retrieved dune-configurator.3.16.0 (cached)
Processing 23/33: [dune-configurator: rm] [jbuilder: ocaml bootstrap.ml]
Processing 23/33: [dune-configurator: dune build] [jbuilder: ocaml bootstrap.ml]
-> compiled dune-configurator.3.16.0
Processing 23/33: [jbuilder: ocaml bootstrap.ml]
-> installed dune-configurator.3.16.0
Processing 24/33: [jbuilder: ocaml bootstrap.ml]
Processing 25/33: [base: dune build] [jbuilder: ocaml bootstrap.ml]
- '/home/opam/.opam/4.11/bin/ocamllex.opt' -q src/meta_lexer.mll
- '/home/opam/.opam/4.11/bin/ocamldep.opt' -modules src/action.ml src/action_intf.ml src/arg_spec.ml src/artifacts.ml src/bin.ml src/binary_kind.ml src/build.ml src/build_interpret.ml src/build_system.ml src/clflags.ml src/cm_kind.ml src/colors.ml src/config.ml src/context.ml src/dep_path.ml src/env.ml src/errors.ml src/exe.ml src/file_tree.ml src/findlib.ml src/gen_meta.ml src/gen_rules.ml src/glob_lexer.boot.ml src/import.ml src/inline_tests.ml src/install.ml src/install_rules.ml src/installed_dune_file.ml src/interned.ml src/jbuild.ml src/jbuild_load.ml vendor/boot/jbuilder_opam_file_format.ml vendor/boot/jbuilder_re.ml src/js_of_ocaml_rules.ml src/lib.ml src/loc.ml src/log.ml src/main.ml src/menhir.ml src/merlin.ml src/meta.ml src/meta_lexer.ml src/ml_kind.ml src/mode.ml src/module.ml src/module_compilation.ml src/modules_partitioner.ml src/ocaml_flags.ml src/ocamldep.ml src/odoc.boot.ml src/opam_file.ml src/ordered_set_lang.ml src/package.ml src/path.ml src/per_item.ml src/preprocessing.ml src/print_diff.ml src/process.ml src/report_error.ml src/scheduler.ml src/scope.ml src/setup.boot.ml src/sexp.ml src/string_with_vars.ml src/sub_system.ml src/sub_system_intf.ml src/sub_system_name.ml src/super_context.ml src/syntax.ml src/top_closure.ml src/utils.ml src/utop.ml src/variant.ml src/vfile_kind.ml src/watermarks.ml src/workspace.ml > boot-depends.txt
- '/home/opam/.opam/4.11/bin/ocamldep.opt' -modules src/stdune/caml/caml.ml src/stdune/caml/result.ml src/stdune/caml/result_compat.ml > boot-depends.txt
- '/home/opam/.opam/4.11/bin/ocamldep.opt' -modules src/fiber/fiber.ml > boot-depends.txt
- '/home/opam/.opam/4.11/bin/ocamldep.opt' -modules src/ocaml-config/ocaml_config.ml > boot-depends.txt
- '/home/opam/.opam/4.11/bin/ocamldep.opt' -modules src/stdune/stdune.ml src/stdune/ansi_color.ml src/stdune/array.ml src/stdune/char.ml src/stdune/common.ml src/stdune/comparable.ml src/stdune/either.ml src/stdune/exn.ml src/stdune/filename.ml src/stdune/hashtbl.ml src/stdune/import.ml src/stdune/int.ml src/stdune/io.ml src/stdune/list.ml src/stdune/map.ml src/stdune/map_intf.ml src/stdune/option.ml src/stdune/or_exn.ml src/stdune/ordering.ml src/stdune/pp.ml src/stdune/result.ml src/stdune/set.ml src/stdune/set_intf.ml src/stdune/staged.ml src/stdune/string.ml > boot-depends.txt
- '/home/opam/.opam/4.11/bin/ocamldep.opt' -modules src/usexp/usexp.ml src/usexp/parser_automaton_internal.ml src/usexp/sexp_ast.ml src/usexp/table.ml > boot-depends.txt
- '/home/opam/.opam/4.11/bin/ocamldep.opt' -modules src/xdg/xdg.ml > boot-depends.txt
- '/home/opam/.opam/4.11/bin/ocamlc.opt' -g -w -40 -o boot.exe unix.cma boot.ml
- File "src/stdune/caml/result.ml", line 4, characters 7-17:
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- File "src/stdune/caml/result.mli", line 6, characters 7-17:
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- File "src/stdune/pp.ml", line 98, characters 7-18:
- Alert deprecated: Stdlib.Format.pp_open_tag
- Use Format.pp_open_stag.
- File "src/stdune/pp.ml", line 100, characters 7-19:
- Alert deprecated: Stdlib.Format.pp_close_tag
- Use Format.pp_close_stag.
- File "src/stdune/pp.ml", line 103, characters 18-48:
- Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions
- Use Format.pp_get_formatter_stag_functions.
- File "src/stdune/pp.ml", line 105, characters 6-36:
- Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions
- This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions.
- File "src/stdune/io.ml", line 1, characters 11-21:
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- File "src/usexp/usexp.ml", line 209, characters 15-52:
- Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions
- Use Format.pp_get_formatter_stag_functions.
- File "src/usexp/usexp.ml", line 210, characters 2-39:
- Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions
- This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions.
- File "src/colors.ml", line 105, characters 18-48:
- Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions
- Use Format.pp_get_formatter_stag_functions.
- File "src/colors.ml", line 107, characters 6-36:
- Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions
- This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions.
Processing 25/33: [base: dune build] [jbuilder: ./boot.exe 39]
- ocamlc src/stdune/caml/.caml.objs/caml__Result.{cmi,cmti}
- File "src/stdune/caml/result.mli", line 6, characters 7-17:
- 6 | open Pervasives
- ^^^^^^^^^^
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- ocamlopt src/stdune/caml/.caml.objs/caml__Result.{cmx,o}
- File "src/stdune/caml/result.ml", line 4, characters 7-17:
- 4 | open Pervasives
- ^^^^^^^^^^
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- ocamlopt src/stdune/.stdune.objs/stdune__Io.{cmx,o}
- File "src/stdune/io.ml", line 1, characters 11-21:
- 1 | module P = Pervasives
- ^^^^^^^^^^
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- ocamlopt src/stdune/.stdune.objs/stdune__Pp.{cmx,o}
- File "src/stdune/pp.ml", line 98, characters 7-18:
- 98 | pp_open_tag ppf (embed_tag ~opening ~closing);
- ^^^^^^^^^^^
- Alert deprecated: Stdlib.Format.pp_open_tag
- Use Format.pp_open_stag.
- File "src/stdune/pp.ml", line 100, characters 7-19:
- 100 | pp_close_tag ppf ()
- ^^^^^^^^^^^^
- Alert deprecated: Stdlib.Format.pp_close_tag
- Use Format.pp_close_stag.
- File "src/stdune/pp.ml", line 103, characters 18-48:
- 103 | let funcs = pp_get_formatter_tag_functions ppf () in
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions
- Use Format.pp_get_formatter_stag_functions.
- File "src/stdune/pp.ml", line 105, characters 6-36:
- 105 | pp_set_formatter_tag_functions ppf
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions
- This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions.
- ocamlopt src/usexp/.usexp.objs/usexp.{cmx,o}
- File "src/usexp/usexp.ml", line 209, characters 15-52:
- 209 | let tfuncs = Format.pp_get_formatter_tag_functions ppf () in
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions
- Use Format.pp_get_formatter_stag_functions.
- File "src/usexp/usexp.ml", line 210, characters 2-39:
- 210 | Format.pp_set_formatter_tag_functions ppf
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions
- This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions.
- ocamlopt src/.jbuilder.objs/jbuilder__Colors.{cmx,o}
- File "src/colors.ml", line 105, characters 18-48:
- 105 | let funcs = pp_get_formatter_tag_functions ppf () in
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions
- Use Format.pp_get_formatter_stag_functions.
- File "src/colors.ml", line 107, characters 6-36:
- 107 | pp_set_formatter_tag_functions ppf
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions
- This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions.
-> compiled jbuilder.1.0+beta20.2
Processing 25/33: [base: dune build]
-> installed jbuilder.1.0+beta20.2
Processing 26/33: [base: dune build]
+ /home/opam/.opam/4.11/bin/dune "build" "-p" "base" "-j" "39" (CWD=/home/opam/.opam/4.11/.opam-switch/build/base.v0.13.2)
-> compiled base.v0.13.2
-> installed base.v0.13.2
Processing 28/33: [stdio: dune build]
+ /home/opam/.opam/4.11/bin/dune "build" "-p" "stdio" "-j" "39" (CWD=/home/opam/.opam/4.11/.opam-switch/build/stdio.v0.13.0)
-> compiled stdio.v0.13.0
-> installed stdio.v0.13.0
Processing 30/33: [configurator: jbuilder build]
+ /home/opam/.opam/4.11/bin/jbuilder "build" "-p" "configurator" "-j" "39" (CWD=/home/opam/.opam/4.11/.opam-switch/build/configurator.v0.11.0)
- ocamlc src/.configurator.objs/configurator.{cmo,cmt}
- File "src/configurator.ml", line 8, characters 20-35:
- 8 | module Pervasives = Caml.Pervasives
- ^^^^^^^^^^^^^^^
- Alert deprecated: module Caml.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- ocamlopt src/.configurator.objs/configurator.{cmx,o}
- File "src/configurator.ml", line 8, characters 20-35:
- 8 | module Pervasives = Caml.Pervasives
- ^^^^^^^^^^^^^^^
- Alert deprecated: module Caml.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
-> compiled configurator.v0.11.0
-> installed configurator.v0.11.0
Processing 32/33: [ocaml-r: dune build]
+ /home/opam/.opam/4.11/bin/dune "build" "-p" "ocaml-r" "-j" "39" (CWD=/home/opam/.opam/4.11/.opam-switch/build/ocaml-r.0.1.1)
- File "lib/dune", line 9, characters 19-37:
- 9 | read_internal_stub
- ^^^^^^^^^^^^^^^^^^
- (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -D_FILE_OFFSET_BITS=64 -D_REENTRANT -I/usr/share/R/include -g -I /home/opam/.opam/4.11/lib/ocaml -o read_internal_stub.o -c read_internal_stub.c)
- In file included from read_internal_stub.c:32:
- read_internal_stub.c: In function 'ocamlr_inspect_primsxp_offset':
- read_internal_stub.c:108:32: error: invalid use of undefined type 'struct SEXPREC'
- 108 | return(Val_int(Sexp_val(sexp)->u.primsxp.offset));
- | ^~
- /home/opam/.opam/4.11/lib/ocaml/caml/mlvalues.h:75:47: note: in definition of macro 'Val_long'
- 75 | #define Val_long(x) ((intnat) (((uintnat)(x) << 1)) + 1)
- | ^
- read_internal_stub.c:108:10: note: in expansion of macro 'Val_int'
- 108 | return(Val_int(Sexp_val(sexp)->u.primsxp.offset));
- | ^~~~~~~
- read_internal_stub.c: In function 'ocamlr_inspect_promsxp_value':
- read_internal_stub.c:241:33: error: invalid use of undefined type 'struct SEXPREC'
- 241 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.value));
- | ^~
- read_internal_stub.c: In function 'ocamlr_inspect_promsxp_expr':
- read_internal_stub.c:254:33: error: invalid use of undefined type 'struct SEXPREC'
- 254 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.expr));
- | ^~
- read_internal_stub.c: In function 'ocamlr_inspect_promsxp_env':
- read_internal_stub.c:267:33: error: invalid use of undefined type 'struct SEXPREC'
- 267 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.env));
- | ^~
- File "lib/dune", line 10, characters 19-38:
- 10 | write_internal_stub
- ^^^^^^^^^^^^^^^^^^^
- (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -D_FILE_OFFSET_BITS=64 -D_REENTRANT -I/usr/share/R/include -g -I /home/opam/.opam/4.11/lib/ocaml -o write_internal_stub.o -c write_internal_stub.c)
- write_internal_stub.c: In function 'ocamlr_write_lisplist_carval':
- write_internal_stub.c:50:21: error: invalid use of undefined type 'struct SEXPREC'
- 50 | Sexp_val(lisplist)->u.listsxp.carval = Sexp_val(elmnt);
- | ^~
- write_internal_stub.c: In function 'ocamlr_write_lisplist_tagval':
- write_internal_stub.c:55:21: error: invalid use of undefined type 'struct SEXPREC'
- 55 | Sexp_val(lisplist)->u.listsxp.tagval = Sexp_val(tag);
- | ^~
- (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -D_FILE_OFFSET_BITS=64 -D_REENTRANT -I/usr/share/R/include -g -I /home/opam/.opam/4.11/lib/ocaml -o initialisation_stub.o -c initialisation_stub.c)
- initialisation_stub.c: In function 'ocamlr_initEmbeddedR':
- initialisation_stub.c:70:35: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
- 70 | for (i=0; i<length; i++) argv[i]=String_val(Field(ml_argv, i));
- | ^
[ERROR] The compilation of ocaml-r.0.1.1 failed at "dune build -p ocaml-r -j 39".
#=== ERROR while compiling ocaml-r.0.1.1 ======================================#
# context 2.1.6 | linux/x86_64 | ocaml-base-compiler.4.11.2 | file:///src
# path ~/.opam/4.11/.opam-switch/build/ocaml-r.0.1.1
# command ~/.opam/4.11/bin/dune build -p ocaml-r -j 39
# exit-code 1
# env-file ~/.opam/log/ocaml-r-115-6e4651.env
# output-file ~/.opam/log/ocaml-r-115-6e4651.out
### output ###
# File "lib/dune", line 9, characters 19-37:
# 9 | read_internal_stub
# ^^^^^^^^^^^^^^^^^^
# (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -D_FILE_OFFSET_BITS=64 -D_REENTRANT -I/usr/share/R/include -g -I /home/opam/.opam/4.11/lib/ocaml -o read_internal_stub.o -c read_internal_stub.c)
# In file included from read_internal_stub.c:32:
# read_internal_stub.c: In function 'ocamlr_inspect_primsxp_offset':
# read_internal_stub.c:108:32: error: invalid use of undefined type 'struct SEXPREC'
# 108 | return(Val_int(Sexp_val(sexp)->u.primsxp.offset));
# | ^~
# /home/opam/.opam/4.11/lib/ocaml/caml/mlvalues.h:75:47: note: in definition of macro 'Val_long'
# 75 | #define Val_long(x) ((intnat) (((uintnat)(x) << 1)) + 1)
# | ^
# read_internal_stub.c:108:10: note: in expansion of macro 'Val_int'
# 108 | return(Val_int(Sexp_val(sexp)->u.primsxp.offset));
# | ^~~~~~~
# read_internal_stub.c: In function 'ocamlr_inspect_promsxp_value':
# read_internal_stub.c:241:33: error: invalid use of undefined type 'struct SEXPREC'
# 241 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.value));
# | ^~
# read_internal_stub.c: In function 'ocamlr_inspect_promsxp_expr':
# read_internal_stub.c:254:33: error: invalid use of undefined type 'struct SEXPREC'
# 254 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.expr));
# | ^~
# read_internal_stub.c: In function 'ocamlr_inspect_promsxp_env':
# read_internal_stub.c:267:33: error: invalid use of undefined type 'struct SEXPREC'
# 267 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.env));
# | ^~
# File "lib/dune", line 10, characters 19-38:
# 10 | write_internal_stub
# ^^^^^^^^^^^^^^^^^^^
# (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -D_FILE_OFFSET_BITS=64 -D_REENTRANT -I/usr/share/R/include -g -I /home/opam/.opam/4.11/lib/ocaml -o write_internal_stub.o -c write_internal_stub.c)
# write_internal_stub.c: In function 'ocamlr_write_lisplist_carval':
# write_internal_stub.c:50:21: error: invalid use of undefined type 'struct SEXPREC'
# 50 | Sexp_val(lisplist)->u.listsxp.carval = Sexp_val(elmnt);
# | ^~
# write_internal_stub.c: In function 'ocamlr_write_lisplist_tagval':
# write_internal_stub.c:55:21: error: invalid use of undefined type 'struct SEXPREC'
# 55 | Sexp_val(lisplist)->u.listsxp.tagval = Sexp_val(tag);
# | ^~
# (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -D_FILE_OFFSET_BITS=64 -D_REENTRANT -I/usr/share/R/include -g -I /home/opam/.opam/4.11/lib/ocaml -o initialisation_stub.o -c initialisation_stub.c)
# initialisation_stub.c: In function 'ocamlr_initEmbeddedR':
# initialisation_stub.c:70:35: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
# 70 | for (i=0; i<length; i++) argv[i]=String_val(Field(ml_argv, i));
# | ^
<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - build ocaml-r 0.1.1
+-
+- The following changes have been performed
| - install base v0.13.2
| - install conf-pkg-config 3
| - install conf-r 1.0.0
| - install conf-r-mathlib 1
| - install configurator v0.11.0
| - install csexp 1.5.2
| - install dune-configurator 3.16.0
| - install jbuilder 1.0+beta20.2
| - install sexplib0 v0.13.0
| - install stdio v0.13.0
+-
<><> configurator.v0.11.0 installed successfully ><><><><><><><><><><><><><><><>
=> configurator is deprecated. Please use dune-configurator in new code and consider switching to it in existing projects.
# Run eval $(opam env) to update the current shell environment
The former state can be restored with:
/usr/bin/opam switch import "/home/opam/.opam/4.11/.opam-switch/backup/state-20240912202632.export"
'opam --cli=2.1 install ocaml-r.0.1.1 stdio.v0.13.0 sexplib0.v0.13.0 jbuilder.1.0+beta20.2 dune-configurator.3.16.0 dune.3.16.0 csexp.1.5.2 configurator.v0.11.0 conf-r-mathlib.1 conf-r.1.0.0 conf-pkg-config.3 base.v0.13.2 --verbose --yes --confirm-level=unsafe-yes' failed.
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