package bistro

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class type index = object ... end
class type abundance_table = object ... end
val quant : ?bootstrap_samples:int -> ?threads:int -> ?fragment_length:float -> ?sd:float -> index Bistro.pworkflow -> fq1: [ `fq of sanger_fastq Bistro.pworkflow | `fq_gz of sanger_fastq Bistro.gz Bistro.pworkflow ] -> ?fq2: [ `fq of sanger_fastq Bistro.pworkflow | `fq_gz of sanger_fastq Bistro.gz Bistro.pworkflow ] -> unit -> [ `kallisto_output ] Bistro.dworkflow
val abundance : [ `kallisto_output ] Bistro.dworkflow -> abundance_table Bistro.pworkflow
val merge_eff_counts : sample_ids:string list -> kallisto_outputs:abundance_table Bistro.pworkflow list -> Bistro.tsv Bistro.pworkflow
val merge_tpms : sample_ids:string list -> kallisto_outputs:abundance_table Bistro.pworkflow list -> Bistro.tsv Bistro.pworkflow
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