package biocaml
The OCaml Bioinformatics Library
Install
Dune Dependency
Authors
Maintainers
Sources
biocaml-0.11.2.tbz
sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d
sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6
doc/biocaml.unix/Biocaml_unix/Track/Transform/index.html
Module Track.TransformSource
Low-level transforms.
Source
val string_to_string_content :
?filename:string ->
unit ->
(string, ([ t | string content ], [> Error.parsing ]) Core.Result.t) Tfxm.tCreate a parser that gets the "track", comment, and "browser" lines and puts the other lines in `content _.
Source
val string_content_to_string :
?add_content_new_line:bool ->
unit ->
([ t | string content ], string) Tfxm.tCreate a printer for track files containing `content line lines.
Source
val string_to_wig :
?filename:string ->
unit ->
(string,
([ t | Wig.item ], [> Error.parsing | Wig.Error.parsing ]) Core.Result.t)
Tfxm.tCreate a composite parser for UCSC WIG files.
Create a printer for track files containing WIG lines.
Source
val string_to_gff :
?filename:string ->
tags:Gff.Tags.t ->
unit ->
(string,
([ t | Gff.item ], [> Error.parsing | Gff.Error.parsing ]) Core.Result.t)
Tfxm.tCreate a composite parser for UCSC GFF files.
Create a printer for track files containing GFF lines.
Source
val string_to_bed :
?filename:string ->
?more_columns:Bed.parsing_spec ->
unit ->
(string,
([ t | Bed.item content ], [> Error.parsing | Bed.Error.parsing ])
Core.Result.t)
Tfxm.tCreate a composite parser for UCSC Bed(Graph) files.