package biocaml

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The OCaml Bioinformatics Library

Install

Dune Dependency

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Sources

biocaml-0.11.2.tbz
sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d
sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.unix/Biocaml_unix/Wig/Error/index.html

Module Wig.ErrorSource

The errors of the Wig module.

Sourcetype parsing = [
  1. | `cannot_parse_key_values of Pos.t * string
  2. | `empty_line of Pos.t
  3. | `incomplete_input of Pos.t * string list * string option
  4. | `missing_chrom_value of Pos.t * string
  5. | `missing_start_value of Pos.t * string
  6. | `missing_step_value of Pos.t * string
  7. | `wrong_start_value of Pos.t * string
  8. | `wrong_step_value of Pos.t * string
  9. | `unrecognizable_line of Pos.t * string list
  10. | `wrong_bed_graph_value of Pos.t * string
  11. | `wrong_fixed_step_value of Pos.t * string
  12. | `wrong_span_value of Pos.t * string
  13. | `wrong_variable_step_value of Pos.t * string
]

The parsing errors.

Sourceval parsing_error_to_string : parsing -> string

Convert a parsing error to a string.

Sourcetype to_bed_graph = [
  1. | `not_in_variable_step_state
  2. | `not_in_fixed_step_state
]

The errors encountered while transforming item values to bed-graph-only values.

Sourcetype t = [
  1. | parsing
  2. | to_bed_graph
]

The union of all errors.

Sourceval parsing_of_sexp : Sexplib.Sexp.t -> parsing
Sourceval sexp_of_parsing : parsing -> Sexplib.Sexp.t
Sourceval t_of_sexp : Sexplib.Sexp.t -> t
Sourceval sexp_of_t : t -> Sexplib.Sexp.t
Sourceval to_bed_graph_of_sexp : Sexplib.Sexp.t -> to_bed_graph
Sourceval sexp_of_to_bed_graph : to_bed_graph -> Sexplib.Sexp.t
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