package biocaml
The OCaml Bioinformatics Library
Install
Dune Dependency
Authors
Maintainers
Sources
biocaml-0.11.2.tbz
sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d
sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6
doc/src/biocaml.base/table.ml.html
Source file table.ml
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module Field (* field parsing *) = struct type 'a result = ('a, string) Result.t type 'a parser = string -> 'a result open Result.Monad_infix let exn_validate f x msg = try Ok (f x) with _ -> Error msg let int s = exn_validate Int.of_string s "Expected integer value" let positive_int s = int s >>= fun i -> if i >= 0 then Ok i else Error "Expected positive integer value" let bounded_int ~lo ~hi s = int s >>= fun i -> if i >= lo && i <= hi then Ok i else let msg = Printf.sprintf "Expected integer value between %d and %d" lo hi in Error msg let string_with_no_sep s = if String.contains s '\n' || String.contains s '\t' then let msg = "Expected string without tab or newline character" in Error msg else Ok s let parse ?(ctx = "<unknown>") f s = match f s with | Ok _ as r -> r | Error msg -> let msg = Printf.sprintf "Field %s is incorrect: %s" ctx msg in Error msg let parse_all ?ctx f xs = parse ?ctx (fun xs -> Result.all (List.map xs ~f)) xs end
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