package biocaml

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in-package search v0.2.0

The OCaml Bioinformatics Library

Install

Dune Dependency

github.com Readme Edit opam file Versions (5)

Authors

Maintainers

P

philippe.veber@gmail.com

Sources

biocaml-0.11.2.tbz

sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d

sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.unix/Biocaml_unix/Seq_range/Make/argument-1-S/Map/index.html

Module `S.Map`

module Key : sig ... end

include Core.Map_intf.S_plain with module Key := Key

type +'a t = (Key.t, 'a, Key.comparator_witness) Base.Map.t

include Ppx_compare_lib.Comparable.S1 with type +'a t := 'a t

val compare : 
  'a Base__.Ppx_compare_lib.compare ->
  'a t Base__.Ppx_compare_lib.compare

include Core.Map_intf.Creators_and_accessors1
  with type 'a t := 'a t
  with type 'a tree :=
         (Key.t, 'a, Key.comparator_witness) Base.Map.Using_comparator.Tree.t
  with type key := Key.t
  with type comparator_witness := Key.comparator_witness

include Core.Map_intf.Creators1
  with type 'a t := 'a t
  with type 'a tree :=
         (Key.t, 'a, Key.comparator_witness) Base.Map.Using_comparator.Tree.t
  with type key := Key.t
  with type comparator_witness := Key.comparator_witness

include Base.Map.Creators1
  with type 'a t := 'a t
  with type 'a tree :=
         (Key.t, 'a, Key.comparator_witness) Base.Map.Using_comparator.Tree.t
  with type key := Key.t
  with type comparator_witness := Key.comparator_witness

val empty : _ t

val singleton : Key.t -> 'a -> 'a t

val map_keys : 
  'v t ->
  f:(Key.t -> Key.t) ->
  [ `Ok of 'v t | `Duplicate_key of Key.t ]

val map_keys_exn : 'v t -> f:(Key.t -> Key.t) -> 'v t

val of_alist : (Key.t * 'a) list -> [ `Ok of 'a t | `Duplicate_key of Key.t ]

val of_alist_or_error : (Key.t * 'a) list -> 'a t Base__.Or_error.t

val of_alist_exn : (Key.t * 'a) list -> 'a t

val of_alist_multi : (Key.t * 'a) list -> 'a list t

val of_alist_fold : (Key.t * 'a) list -> init:'b -> f:('b -> 'a -> 'b) -> 'b t

val of_alist_reduce : (Key.t * 'a) list -> f:('a -> 'a -> 'a) -> 'a t

val of_sorted_array : (Key.t * 'a) array -> 'a t Base__.Or_error.t

val of_sorted_array_unchecked : (Key.t * 'a) array -> 'a t

val of_increasing_iterator_unchecked : len:int -> f:(int -> Key.t * 'a) -> 'a t

val of_increasing_sequence : 
  (Key.t * 'a) Base__.Sequence.t ->
  'a t Base__.Or_error.t

val of_sequence : 
  (Key.t * 'a) Base__.Sequence.t ->
  [ `Ok of 'a t | `Duplicate_key of Key.t ]

val of_sequence_or_error : 
  (Key.t * 'a) Base__.Sequence.t ->
  'a t Base__.Or_error.t

val of_sequence_exn : (Key.t * 'a) Base__.Sequence.t -> 'a t

val of_sequence_multi : (Key.t * 'a) Base__.Sequence.t -> 'a list t

val of_sequence_fold : 
  (Key.t * 'a) Base__.Sequence.t ->
  init:'b ->
  f:('b -> 'a -> 'b) ->
  'b t

val of_sequence_reduce : 
  (Key.t * 'a) Base__.Sequence.t ->
  f:('a -> 'a -> 'a) ->
  'a t

val of_iteri : 
  iteri:(f:(key:Key.t -> data:'v -> unit) -> unit) ->
  [ `Ok of 'v t | `Duplicate_key of Key.t ]

val of_iteri_exn : iteri:(f:(key:Key.t -> data:'v -> unit) -> unit) -> 'v t

val of_tree : 
  (Key.t, 'a, Key.comparator_witness) Base.Map.Using_comparator.Tree.t ->
  'a t

val of_hashtbl_exn : (Key.t, 'a) Core.Hashtbl.t -> 'a t

val of_key_set : 
  (Key.t, Key.comparator_witness) Base.Set.t ->
  f:(Key.t -> 'v) ->
  'v t

val quickcheck_generator : 
  Key.t Core.Quickcheck.Generator.t ->
  'a Core.Quickcheck.Generator.t ->
  'a t Core.Quickcheck.Generator.t

include Core.Map_intf.Accessors1
  with type 'a t := 'a t
  with type 'a tree :=
         (Key.t, 'a, Key.comparator_witness) Base.Map.Using_comparator.Tree.t
  with type key := Key.t
  with type comparator_witness := Key.comparator_witness

include Base.Map.Accessors1
  with type 'a t := 'a t
  with type 'a tree :=
         (Key.t, 'a, Key.comparator_witness) Base.Map.Using_comparator.Tree.t
  with type key := Key.t
  with type comparator_witness := Key.comparator_witness

val invariants : _ t -> bool

val is_empty : _ t -> bool

val length : _ t -> int

val add : 'a t -> key:Key.t -> data:'a -> 'a t Base__.Map_intf.Or_duplicate.t

val add_exn : 'a t -> key:Key.t -> data:'a -> 'a t

val set : 'a t -> key:Key.t -> data:'a -> 'a t

val add_multi : 'a list t -> key:Key.t -> data:'a -> 'a list t

val remove_multi : 'a list t -> Key.t -> 'a list t

val find_multi : 'a list t -> Key.t -> 'a list

val change : 'a t -> Key.t -> f:('a option -> 'a option) -> 'a t

val update : 'a t -> Key.t -> f:('a option -> 'a) -> 'a t

val find : 'a t -> Key.t -> 'a option

val find_exn : 'a t -> Key.t -> 'a

val remove : 'a t -> Key.t -> 'a t

val mem : _ t -> Key.t -> bool

val iter_keys : _ t -> f:(Key.t -> unit) -> unit

val iter : 'a t -> f:('a -> unit) -> unit

val iteri : 'a t -> f:(key:Key.t -> data:'a -> unit) -> unit

val iteri_until : 
  'a t ->
  f:(key:Key.t -> data:'a -> Base__.Map_intf.Continue_or_stop.t) ->
  Base__.Map_intf.Finished_or_unfinished.t

val iter2 : 
  'a t ->
  'b t ->
  f:(key:Key.t -> data:('a, 'b) Base__.Map_intf.Merge_element.t -> unit) ->
  unit

val map : 'a t -> f:('a -> 'b) -> 'b t

val mapi : 'a t -> f:(key:Key.t -> data:'a -> 'b) -> 'b t

val fold : 'a t -> init:'b -> f:(key:Key.t -> data:'a -> 'b -> 'b) -> 'b

val fold_until : 
  'a t ->
  init:'acc ->
  f:
    (key:Key.t ->
      data:'a ->
      'acc ->
      ('acc, 'final) Base__.Container_intf.Export.Continue_or_stop.t) ->
  finish:('acc -> 'final) ->
  'final

val fold_right : 'a t -> init:'b -> f:(key:Key.t -> data:'a -> 'b -> 'b) -> 'b

val fold2 : 
  'a t ->
  'b t ->
  init:'c ->
  f:(key:Key.t -> data:('a, 'b) Base__.Map_intf.Merge_element.t -> 'c -> 'c) ->
  'c

val filter_keys : 'a t -> f:(Key.t -> bool) -> 'a t

val filter : 'a t -> f:('a -> bool) -> 'a t

val filteri : 'a t -> f:(key:Key.t -> data:'a -> bool) -> 'a t

val filter_map : 'a t -> f:('a -> 'b option) -> 'b t

val filter_mapi : 'a t -> f:(key:Key.t -> data:'a -> 'b option) -> 'b t

val partition_mapi : 
  'a t ->
  f:(key:Key.t -> data:'a -> ('b, 'c) Base__.Either.t) ->
  'b t * 'c t

val partition_map : 'a t -> f:('a -> ('b, 'c) Base__.Either.t) -> 'b t * 'c t

val partitioni_tf : 'a t -> f:(key:Key.t -> data:'a -> bool) -> 'a t * 'a t

val partition_tf : 'a t -> f:('a -> bool) -> 'a t * 'a t

val combine_errors : 'a Base__.Or_error.t t -> 'a t Base__.Or_error.t

val compare_direct : ('a -> 'a -> int) -> 'a t -> 'a t -> int

val equal : ('a -> 'a -> bool) -> 'a t -> 'a t -> bool

val keys : _ t -> Key.t list

val data : 'a t -> 'a list

val to_alist : 
  ?key_order:[ `Increasing | `Decreasing ] ->
  'a t ->
  (Key.t * 'a) list

val merge : 
  'a t ->
  'b t ->
  f:(key:Key.t -> ('a, 'b) Base__.Map_intf.Merge_element.t -> 'c option) ->
  'c t

val merge_skewed : 
  'v t ->
  'v t ->
  combine:(key:Key.t -> 'v -> 'v -> 'v) ->
  'v t

val symmetric_diff : 
  'a t ->
  'a t ->
  data_equal:('a -> 'a -> bool) ->
  (Key.t, 'a) Base__.Map_intf.Symmetric_diff_element.t Base__.Sequence.t

val fold_symmetric_diff : 
  'a t ->
  'a t ->
  data_equal:('a -> 'a -> bool) ->
  init:'c ->
  f:('c -> (Key.t, 'a) Base__.Map_intf.Symmetric_diff_element.t -> 'c) ->
  'c

val min_elt : 'a t -> (Key.t * 'a) option

val min_elt_exn : 'a t -> Key.t * 'a

val max_elt : 'a t -> (Key.t * 'a) option

val max_elt_exn : 'a t -> Key.t * 'a

val for_all : 'a t -> f:('a -> bool) -> bool

val for_alli : 'a t -> f:(key:Key.t -> data:'a -> bool) -> bool

val exists : 'a t -> f:('a -> bool) -> bool

val existsi : 'a t -> f:(key:Key.t -> data:'a -> bool) -> bool

val count : 'a t -> f:('a -> bool) -> int

val counti : 'a t -> f:(key:Key.t -> data:'a -> bool) -> int

val split : 'a t -> Key.t -> 'a t * (Key.t * 'a) option * 'a t

val append : 
  lower_part:'a t ->
  upper_part:'a t ->
  [ `Ok of 'a t | `Overlapping_key_ranges ]

val subrange : 
  'a t ->
  lower_bound:Key.t Base__.Maybe_bound.t ->
  upper_bound:Key.t Base__.Maybe_bound.t ->
  'a t

val fold_range_inclusive : 
  'a t ->
  min:Key.t ->
  max:Key.t ->
  init:'b ->
  f:(key:Key.t -> data:'a -> 'b -> 'b) ->
  'b

val range_to_alist : 'a t -> min:Key.t -> max:Key.t -> (Key.t * 'a) list

val closest_key : 
  'a t ->
  [ `Greater_or_equal_to | `Greater_than | `Less_or_equal_to | `Less_than ] ->
  Key.t ->
  (Key.t * 'a) option

val nth : 'a t -> int -> (Key.t * 'a) option

val nth_exn : 'a t -> int -> Key.t * 'a

val rank : _ t -> Key.t -> int option

val to_tree : 
  'a t ->
  (Key.t, 'a, Key.comparator_witness) Base.Map.Using_comparator.Tree.t

val to_sequence : 
  ?order:[ `Increasing_key | `Decreasing_key ] ->
  ?keys_greater_or_equal_to:Key.t ->
  ?keys_less_or_equal_to:Key.t ->
  'a t ->
  (Key.t * 'a) Base__.Sequence.t

val binary_search : 
  'a t ->
  compare:(key:Key.t -> data:'a -> 'key -> int) ->
  Base__.Binary_searchable_intf.Which_target_by_key.t ->
  'key ->
  (Key.t * 'a) option

val binary_search_segmented : 
  'a t ->
  segment_of:(key:Key.t -> data:'a -> [ `Left | `Right ]) ->
  Base__.Binary_searchable_intf.Which_target_by_segment.t ->
  (Key.t * 'a) option

val binary_search_subrange : 
  'a t ->
  compare:(key:Key.t -> data:'a -> 'bound -> int) ->
  lower_bound:'bound Base__.Maybe_bound.t ->
  upper_bound:'bound Base__.Maybe_bound.t ->
  'a t

val key_set : _ t -> (Key.t, Key.comparator_witness) Base.Set.t

val validate : 
  name:(Key.t -> Base.String.t) ->
  'a Validate.check ->
  'a t Validate.check

val validatei : 
  name:(Key.t -> Base.String.t) ->
  (Key.t * 'a) Validate.check ->
  'a t Validate.check

val quickcheck_observer : 
  Key.t Core.Quickcheck.Observer.t ->
  'v Core.Quickcheck.Observer.t ->
  'v t Core.Quickcheck.Observer.t

val quickcheck_shrinker : 
  Key.t Core.Quickcheck.Shrinker.t ->
  'v Core.Quickcheck.Shrinker.t ->
  'v t Core.Quickcheck.Shrinker.t

module Provide_of_sexp (Key : sig ... end) : sig ... end

module Provide_bin_io
  (Key : sig ... end) : 
  Core.Map_intf.Binable.S1 with type 'a t := 'a t

module Provide_hash (Key : Base.Hasher.S with type t := Key.t) : sig ... end

include Base.Sexpable.S1 with type 'a t := 'a t

val t_of_sexp : (Sexplib0.Sexp.t -> 'a) -> Sexplib0.Sexp.t -> 'a t

val sexp_of_t : ('a -> Sexplib0.Sexp.t) -> 'a t -> Sexplib0.Sexp.t