package biocaml

You can search for identifiers within the package.

in-package search v0.2.0

The OCaml Bioinformatics Library

Install

Dune Dependency

github.com Readme Edit opam file Versions (5)

Authors

Maintainers

P

philippe.veber@gmail.com

Sources

biocaml-0.11.2.tbz

sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d

sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.base/Biocaml_base/Ucsc_genome_browser/index.html

Module `Biocaml_base.Ucsc_genome_browser`Source

Sourcetype assembly = [

| `dm3
| `droSim1
| `hg18
| `hg19
| `hg38
| `mm8
| `mm9
| `mm10
| `sacCer2

]

Sourceval string_of_assembly : [< assembly ] -> Base.string

Sourcetype track_attribute = [

| `name of Base.string
| `description of Base.string
| `type_ of track_type
| `visibility of [ `hide | `full | `dense | `pack | `squish ]
| `color of color
| `itemRgb of Base.bool
| `colorByStrand of color * color
| `useScore of Base.bool
| `group of Base.string
| `priority of Base.int
| `db of assembly
| `offset of Base.int
| `maxItems of Base.int
| `url of Base.string
| `htmlUrl of Base.string
| `bigDataUrl of Base.string

]

Sourceand color = Base.int * Base.int * Base.int

Sourceand track_type = [

| `bam
| `bedDetail
| `bedGraph
| `bigBed
| `bigWig
| `broadPeak
| `narrowPeak
| `array
| `vcf
| `wig

]

Sourceval track_line : track_attribute Base.list -> Base.string

Sourcetype url_param = [

| `pix of Base.int
| `hgt_labelWidth of Base.int
| `textSize of Base.int

]

Source

val custom_track_url : 
  ?params:url_param Base.list ->
  db:[< assembly ] ->
  position:(Base.string * (Base.int * Base.int) Base.option) ->
  data_url:Base.string ->
  Base.unit ->
  Base.string