package biocaml
The OCaml Bioinformatics Library
Install
Dune Dependency
Authors
Maintainers
Sources
biocaml-0.11.2.tbz
sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d
sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6
doc/src/biocaml.unix/future_unix.ml.html
Source file future_unix.ml
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open CFStream type how = [ `Parallel | `Sequential | `Max_concurrent_jobs of int ] module Deferred = struct type 'a t = 'a include Monad.Make(struct type 'a t = 'a let return x = x let bind m ~f = f m let map = `Custom (fun m ~f -> f m) end) let unit = () module Result = struct type ('a, 'b) t = ('a, 'b) Result.t include Monad.Make2(struct type ('a, 'b) t = ('a, 'b) Result.t let return = Result.return let bind = Result.bind let map = `Custom Result.map end) end module List = struct let fold = List.fold let iter ?how:_ l ~f = List.iter l ~f let map ?how:_ l ~f = List.map l ~f let filter ?how:_ l ~f = List.filter l ~f end module Or_error = struct module List = struct let map ?(how = `Sequential) l ~f = let () = ignore how in let module M = struct exception E of Error.t let helper () = List.map l ~f:(fun x -> match f x with | Ok x -> x | Error e -> raise (E e) ) end in try Ok (M.helper()) with M.E e -> Error e let iter ?(how = `Sequential) l ~f = let () = ignore how in let module M = struct exception E of Error.t let helper () = List.iter l ~f:(fun x -> match f x with | Ok () -> () | Error e -> raise (E e) ) end in try Ok (M.helper()) with M.E e -> Error e end end end let return = Deferred.return let (>>=) x f = Deferred.bind x ~f let (>>|) = Deferred.(>>|) let (>>=?) = Deferred.Result.(>>=) let (>>|?) = Deferred.Result.(>>|) let fail = raise let raise = `Use_fail_instead let try_with f = try Ok (f ()) with exn -> Error exn module In_thread = struct let run f = f () end module Pipe = struct module Reader = struct type 'a t = 'a Stream.t end let read r = match Stream.next r with | Some x -> `Ok x | None -> `Eof let junk = Stream.junk let peek_deferred r = match Stream.peek r with | Some x -> `Ok x | None -> `Eof let map = Stream.map let fold = Stream.fold let iter = Stream.iter end module Reader = struct module Read_result = struct type 'a t = [ `Eof | `Ok of 'a ] end type t = In_channel.t let open_file ?buf_len:_ file = In_channel.create file let close = In_channel.close let with_file ?buf_len file ~f = match buf_len with | None | Some _ -> In_channel.with_file file ~f let read_line ic = match In_channel.input_line ~fix_win_eol:true ic with | Some x -> `Ok x | None -> `Eof let read_all ic read_one = Stream.from (fun _ -> match read_one ic with | `Ok x -> Some x | `Eof -> In_channel.close ic; None ) let lines ic = read_all ic read_line let contents = In_channel.input_all let file_contents = In_channel.read_all let file_lines fn = In_channel.read_lines fn end module Writer = struct type t = Out_channel.t let with_file ?perm ?append file ~f = Out_channel.with_file ?perm ?append file ~f let write = Out_channel.output_string let write_char = Out_channel.output_char let write_line t s = Out_channel.output_string t s; Out_channel.newline t end
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