package biocaml

You can search for identifiers within the package.

in-package search v0.2.0

The OCaml Bioinformatics Library

Install

sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d

sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

Sequence Graph (SGR) files.

Sourcetype t

Sourceexception Bad of string

val of_channel : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  Core.In_channel.t ->
  t

Sourceval of_file : ?chr_map:(string -> string) -> ?increment_bp:int -> string -> t

Sourceval of_list : (string * int * float) list -> t

Sourceval of_chr_lists : (string * (int * float) list) list -> t

val to_channel : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  t ->
  Core.Out_channel.t ->
  unit

val to_file : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  t ->
  string ->
  unit

Items will be printed in ascending order by (chr,coord).

Sourceval to_list : t -> (string * int * float) list

Items will be returned in ascending order by (chr,coord).

Sourceval to_chr_lists : t -> (string * (int * float) list) list

Outer list will be in ascending order by chr, and inner lists will be in ascending order by coord.