package biocaml

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in-package search v0.2.0

The OCaml Bioinformatics Library

Install

Dune Dependency

github.com Readme Edit opam file Versions (5)

Authors

Maintainers

P

philippe.veber@gmail.com

Sources

biocaml-0.11.2.tbz

sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d

sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.unix/Biocaml_unix/Seq_range/index.html

Module `Biocaml_unix.Seq_range`Source

Range on a sequence, where the sequence is represented by an identifier.

This datatype can be used to represent genomic regions with a triplet (chromosome, start, end) as can be found in say, BED files. The Seq_range.Make functor offers some genericity for the choice of the type representing a sequence identifier, while the module offers the most frequent case when the identifier is a simple string.

Most operations on Seq_range.t are simple extensions of operations on Range.t.

Sourcemodule type Identifier = sig ... end

Sourcemodule Make (S : Identifier) : sig ... end

include sig ... end

Sourcetype t = Core.String.t * Range.t

Sourceval compare : t Base__Ppx_compare_lib.compare

Sourceval t_of_sexp : Sexplib0.Sexp.t -> t

Sourceval sexp_of_t : t -> Sexplib0.Sexp.t

Sourceval make : Core.String.t -> int -> int -> t Core.Or_error.t

Sourceval seq : t -> Core.String.t

Sourceval size : t -> int

Sourceval to_string : t -> string

String representation of a sequence range, as <seq>:<start>-<end>

Sourceval of_string : string -> t Core.Or_error.t

Parses a string representation of a sequence range, as <seq>:<start>-<end>