package biocaml

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in-package search v0.2.0

The OCaml Bioinformatics Library

Install

sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d

sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

Read mzData files (mass spectrometry data format).

type vec =
  (float, Bigarray.float64_elt, Bigarray.fortran_layout) Bigarray.Array1.t

Vectors of 64 bits floats.

type int_vec =
  (int, Bigarray.int_elt, Bigarray.fortran_layout) Bigarray.Array1.t

Vectors of OCaml ints.

Sourcemodule Precursor : sig ... end

Sourcetype spectrum = {

id : int;
(*
index of the spectrum in the file (starting with 1).
*)
mslevel : int;
(*
1: MS, 2: MS/MS,...
*)
precursor : Precursor.t list;
(*
List of precursors to the spectrum currently being described.
*)
mz : vec;
(*
m/z
*)
int : vec;
(*
intensities
*)
sup : (string * vec) list;
(*
Supplemental (name, arrays), if any
*)

}

Individual mass spectrum.

Sourceval of_file : string -> spectrum list

of_file fname returns the spectra contained in the file fname.