package biocaml

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in-package search v0.2.0

The OCaml Bioinformatics Library

Install

sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d

sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

A collection of non-overlapping regions (e.g. a set of CpG islands)

Sourcetype t

Sourceval empty : t

Sourceval add : t -> location -> t

Sourceval inter : t -> t -> t

Sourceval union : t -> t -> t

Sourceval diff : t -> t -> t

Sourceval size : t -> int

Sourceval intersects : t -> location -> bool

intersects loc sel returns true if loc has a non-empty intersection with sel, and false otherwise.

Sourceval overlap : t -> location -> int

Sourceval to_stream : t -> location Stream.t

Sourceval of_stream : location Stream.t -> t

of_stream e computes a selection (i.e. a set of non overlapping locations) as the union of the locations contained in e