package biocaml

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in-package search v0.2.0

The OCaml Bioinformatics Library

Install

sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d

sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

Sourcetype t = {

total : int;
qc_pass : int;
(*
not_passing_quality_controls returns false, assumed for all other counts
*)
single_reads : int;
(*
has_multiple_segments returns false
*)
read_pairs : int;
(*
has_multiple_segments and first_segment
*)
mapped_reads : int;
(*
!segment_unmapped and !secondary_alignment and !supplementary_alignment
*)
mapped_pairs : int;
(*
has_multiple_segments and first_segment and each_segment_properly_aligned and !secondary_alignment and !supplementary_alignment
*)

}

include Sexplib0.Sexpable.S with type t := t

Sourceval t_of_sexp : Sexplib0.Sexp.t -> t

Sourceval sexp_of_t : t -> Sexplib0.Sexp.t

Sourceval zero : t

Sourceval update0 : t -> Bam.Alignment0.t -> t Core.Or_error.t

Sourceval update : t -> Sam.alignment -> t

Sourcemodule Fragment_length_histogram : sig ... end

Sourcemodule Chr_histogram : sig ... end