package biocaml
The OCaml Bioinformatics Library
Install
Dune Dependency
Authors
Maintainers
Sources
v0.11.1.tar.gz
md5=e292efa2f61fec33dad63ec897106f59
sha512=35519bf3b1e67a9191ef9bb74eba0dae941e0d05bad89076a36f507dc5c2d105a03c1c917d5a3f7ed9d1da4acbf3199582f78c308aa2a5a22c21f743945c852b
doc/biocaml.unix/Biocaml_unix/Track/Transform/index.html
Module Track.TransformSource
Low-level transforms.
Source
val string_to_string_content :
?filename:string ->
unit ->
(string, ([ t | string content ], [> Error.parsing ]) Core_kernel.Result.t)
Tfxm.tCreate a parser that gets the "track", comment, and "browser" lines and puts the other lines in `content _.
Source
val string_content_to_string :
?add_content_new_line:bool ->
unit ->
([ t | string content ], string) Tfxm.tCreate a printer for track files containing `content line lines.
Source
val string_to_wig :
?filename:string ->
unit ->
(string,
([ t | Wig.item ], [> Error.parsing | Wig.Error.parsing ])
Core_kernel.Result.t)
Tfxm.tCreate a composite parser for UCSC WIG files.
Create a printer for track files containing WIG lines.
Source
val string_to_gff :
?filename:string ->
tags:Gff.Tags.t ->
unit ->
(string,
([ t | Gff.item ], [> Error.parsing | Gff.Error.parsing ])
Core_kernel.Result.t)
Tfxm.tCreate a composite parser for UCSC GFF files.
Create a printer for track files containing GFF lines.
Source
val string_to_bed :
?filename:string ->
?more_columns:Bed.parsing_spec ->
unit ->
(string,
([ t | Bed.item content ], [> Error.parsing | Bed.Error.parsing ])
Core_kernel.Result.t)
Tfxm.tCreate a composite parser for UCSC Bed(Graph) files.