package biocaml

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in-package search v0.2.0

The OCaml Bioinformatics Library

Install

md5=e292efa2f61fec33dad63ec897106f59

sha512=35519bf3b1e67a9191ef9bb74eba0dae941e0d05bad89076a36f507dc5c2d105a03c1c917d5a3f7ed9d1da4acbf3199582f78c308aa2a5a22c21f743945c852b

Sequence Graph (SGR) files.

Sourcetype t

Sourceexception Bad of string

val of_channel : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  Core_kernel.In_channel.t ->
  t

Sourceval of_file : ?chr_map:(string -> string) -> ?increment_bp:int -> string -> t

Sourceval of_list : (string * int * float) list -> t

Sourceval of_chr_lists : (string * (int * float) list) list -> t

val to_channel : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  t ->
  Core_kernel.Out_channel.t ->
  unit

val to_file : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  t ->
  string ->
  unit

Items will be printed in ascending order by (chr,coord).

Sourceval to_list : t -> (string * int * float) list

Items will be returned in ascending order by (chr,coord).

Sourceval to_chr_lists : t -> (string * (int * float) list) list

Outer list will be in ascending order by chr, and inner lists will be in ascending order by coord.