package biocaml

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The OCaml Bioinformatics Library

Install

md5=e292efa2f61fec33dad63ec897106f59

sha512=35519bf3b1e67a9191ef9bb74eba0dae941e0d05bad89076a36f507dc5c2d105a03c1c917d5a3f7ed9d1da4acbf3199582f78c308aa2a5a22c21f743945c852b

A collection of non-overlapping regions (e.g. a set of CpG islands)

Sourcetype t

Sourceval empty : t

Sourceval add : t -> location -> t

Sourceval inter : t -> t -> t

Sourceval union : t -> t -> t

Sourceval diff : t -> t -> t

Sourceval size : t -> int

Sourceval intersects : t -> location -> bool

intersects loc sel returns true if loc has a non-empty intersection with sel, and false otherwise.

Sourceval overlap : t -> location -> int

Sourceval to_stream : t -> location Stream.t

Sourceval of_stream : location Stream.t -> t

of_stream e computes a selection (i.e. a set of non overlapping locations) as the union of the locations contained in e