package biocaml

You can search for identifiers within the package.

in-package search v0.2.0

The OCaml Bioinformatics Library

Install

md5=e292efa2f61fec33dad63ec897106f59

sha512=35519bf3b1e67a9191ef9bb74eba0dae941e0d05bad89076a36f507dc5c2d105a03c1c917d5a3f7ed9d1da4acbf3199582f78c308aa2a5a22c21f743945c852b

Sourcetype t = {

total : int;
qc_pass : int;
(*
not_passing_quality_controls returns false, assumed for all other counts
*)
single_reads : int;
(*
has_multiple_segments returns false
*)
read_pairs : int;
(*
has_multiple_segments and first_segment
*)
mapped_reads : int;
(*
!segment_unmapped and !secondary_alignment and !supplementary_alignment
*)
mapped_pairs : int;
(*
has_multiple_segments and first_segment and each_segment_properly_aligned and !secondary_alignment and !supplementary_alignment
*)

}

include Ppx_sexp_conv_lib.Sexpable.S with type t := t

Sourceval t_of_sexp : Sexplib0__.Sexp.t -> t

Sourceval sexp_of_t : t -> Sexplib0__.Sexp.t

Sourceval zero : t

Sourceval update0 : t -> Bam.Alignment0.t -> t Core_kernel.Or_error.t

Sourceval update : t -> Sam.alignment -> t

Sourcemodule Fragment_length_histogram : sig ... end

Sourcemodule Chr_histogram : sig ... end