package biocaml

You can search for identifiers within the package.

in-package search v0.2.0

The OCaml Bioinformatics Library

Install

Dune Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

Maintainers

B

biocaml@googlegroups.com

Sources

v0.11.1.tar.gz

md5=e292efa2f61fec33dad63ec897106f59

sha512=35519bf3b1e67a9191ef9bb74eba0dae941e0d05bad89076a36f507dc5c2d105a03c1c917d5a3f7ed9d1da4acbf3199582f78c308aa2a5a22c21f743945c852b

doc/biocaml.ez/Biocaml_ez/Fastq/index.html

Module `Biocaml_ez.Fastq`Source

Sourcetype nonrec item = Biocaml_unix.Fastq.item

Sourceval split_name : string -> string * string option

Source

val read : 
  Biocaml_unix.Future_unix.Reader.t ->
  Biocaml_unix.Fastq.item CFStream.Stream.t

Source

val write : 
  Biocaml_unix.Future_unix.Writer.t ->
  Biocaml_unix.Fastq.item Biocaml_unix.Future_unix.Pipe.Reader.t ->
  unit Biocaml_unix.Future_unix.Deferred.t

Source

val write_file : 
  ?perm:int ->
  ?append:bool ->
  string ->
  Biocaml_unix.Fastq.item Biocaml_unix.Future_unix.Pipe.Reader.t ->
  unit Biocaml_unix.Future_unix.Deferred.t

Sourcemodule Illumina : sig ... end

Sourceval item_to_string : Biocaml_unix.Fastq.item -> string

Sourceval name_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Sourceval sequence_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Sourceval comment_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Source

val qualities_of_line : 
  ?pos:Biocaml_unix.Pos.t ->
  ?sequence:string ->
  Biocaml_unix.Line.t ->
  string

package biocaml

Install

Dune Dependency

Authors

Maintainers

Sources

doc/biocaml.ez/Biocaml_ez/Fastq/index.html

Module Biocaml_ez.FastqSource

Module `Biocaml_ez.Fastq`Source