package biocaml

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The OCaml Bioinformatics Library

Install

Dune Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

Maintainers

B

biocaml@googlegroups.com

Sources

v0.11.1.tar.gz

md5=e292efa2f61fec33dad63ec897106f59

sha512=35519bf3b1e67a9191ef9bb74eba0dae941e0d05bad89076a36f507dc5c2d105a03c1c917d5a3f7ed9d1da4acbf3199582f78c308aa2a5a22c21f743945c852b

doc/biocaml.base/Biocaml_base/Fasta/Parser0/index.html

Module `Fasta.Parser0`Source

Low-level parsing

This module provides a function that can be used to convert a stream of strings (representing consecutive chunks of a FASTA file) into a valid sequence of low-level items (items0). This representation is especially relevant to deal with very long sequences (like chromosome) in constant memory.

Sourcetype state

Sourceval initial_state : ?fmt:fmt -> Base.unit -> state

Source

val step : 
  state ->
  Base.string Base.option ->
  (state * item0 Base.list, [> parser_error ]) Base.Result.t