package biocaml

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The OCaml Bioinformatics Library

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Dune Dependency

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v0.11.0.tar.gz
md5=486aeb3e552dabae85839e2af30d6c52
sha512=4ed2df0b7cbd80bd6e29bd8fee9d2dacd9379ad0f4ff142bd8e16ade3f1507f6cc7cbe4c614943b8feb8fa4705935695cb458606b0da813dbf255b1e566a43cf

doc/biocaml.unix/Biocaml_unix/Wig/Transform/index.html

Module Wig.TransformSource

Low-level Tfxm.t.

Sourceval string_to_item : ?filename:string -> ?tags:Tags.t -> unit -> (string, (item, [> Error.parsing ]) Core_kernel.result) Tfxm.t

Create the parsing Tfxm.t. The parser is "best-effort" and stateless (i.e. a line containing "1000 42." will parsed successfully as a `variable_step_value (1000, 42.) even if no "variableStep" was line present before).

Sourceval item_to_string : ?tags:Tags.t -> unit -> (item, string) Tfxm.t

Create the transform that prints item values to strings.

Sourceval item_to_bed_graph : unit -> (item, (bed_graph_value, [> Error.to_bed_graph ]) Core_kernel.result) Tfxm.t

Create a transform which converts `variable_step_value _ and `fixed_step_value _ values to `bed_graph_value _ values, using the current state. The `bed_graph_value _ items stay untouched and `comment _ values are ignored.

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