package biocaml

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The OCaml Bioinformatics Library

Install

Dune Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

Maintainers

B

biocaml@googlegroups.com

Sources

v0.11.0.tar.gz

md5=486aeb3e552dabae85839e2af30d6c52

sha512=4ed2df0b7cbd80bd6e29bd8fee9d2dacd9379ad0f4ff142bd8e16ade3f1507f6cc7cbe4c614943b8feb8fa4705935695cb458606b0da813dbf255b1e566a43cf

doc/biocaml.unix/Biocaml_unix/Track/Transform/index.html

Module `Track.Transform`Source

Low-level transforms.

Source

val string_to_string_content : 
  ?filename:string ->
  unit ->
  (string, ([ t | string content ], [> Error.parsing ]) Core_kernel.Result.t)
    Tfxm.t

Create a parser that gets the "track", comment, and "browser" lines and puts the other lines in `content _.

Source

val string_content_to_string : 
  ?add_content_new_line:bool ->
  unit ->
  ([ t | string content ], string) Tfxm.t

Create a printer for track files containing `content line lines.

Source

val string_to_wig : 
  ?filename:string ->
  unit ->
  (string,
    ([ t | Wig.item ], [> Error.parsing | Wig.Error.parsing ])
      Core_kernel.Result.t)
    Tfxm.t

Create a composite parser for UCSC WIG files.

Sourceval wig_to_string : unit -> ([ t | Wig.item ], string) Tfxm.t

Create a printer for track files containing WIG lines.

Source

val string_to_gff : 
  ?filename:string ->
  tags:Gff.Tags.t ->
  unit ->
  (string,
    ([ t | Gff.item ], [> Error.parsing | Gff.Error.parsing ])
      Core_kernel.Result.t)
    Tfxm.t

Create a composite parser for UCSC GFF files.

Source

val gff_to_string : 
  tags:Gff.Tags.t ->
  unit ->
  ([ t | Gff.item ], string) Tfxm.t

Create a printer for track files containing GFF lines.

Source

val string_to_bed : 
  ?filename:string ->
  ?more_columns:Bed.parsing_spec ->
  unit ->
  (string,
    ([ t | Bed.item content ], [> Error.parsing | Bed.Error.parsing ])
      Core_kernel.Result.t)
    Tfxm.t

Create a composite parser for UCSC Bed(Graph) files.

Sourceval bed_to_string : unit -> ([ t | Bed.item content ], string) Tfxm.t

Create a printer for track files containing Bed(Graph) lines.

package biocaml

Install

Dune Dependency

Authors

Maintainers

Sources

doc/biocaml.unix/Biocaml_unix/Track/Transform/index.html

Module Track.TransformSource

Module `Track.Transform`Source