package biocaml

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The OCaml Bioinformatics Library

Install

md5=486aeb3e552dabae85839e2af30d6c52

sha512=4ed2df0b7cbd80bd6e29bd8fee9d2dacd9379ad0f4ff142bd8e16ade3f1507f6cc7cbe4c614943b8feb8fa4705935695cb458606b0da813dbf255b1e566a43cf

Read mzData files (mass spectrometry data format).

type vec =
  (float, Bigarray.float64_elt, Bigarray.fortran_layout) Bigarray.Array1.t

Vectors of 64 bits floats.

type int_vec =
  (int, Bigarray.int_elt, Bigarray.fortran_layout) Bigarray.Array1.t

Vectors of OCaml ints.

Sourcemodule Precursor : sig ... end

Sourcetype spectrum = {

id : int;
(*
index of the spectrum in the file (starting with 1).
*)
mslevel : int;
(*
1: MS, 2: MS/MS,...
*)
precursor : Precursor.t list;
(*
List of precursors to the spectrum currently being described.
*)
mz : vec;
(*
m/z
*)
int : vec;
(*
intensities
*)
sup : (string * vec) list;
(*
Supplemental (name, arrays), if any
*)

}

Individual mass spectrum.

Sourceval of_file : string -> spectrum list

of_file fname returns the spectra contained in the file fname.