package biocaml

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in-package search v0.2.0

The OCaml Bioinformatics Library

Install

md5=486aeb3e552dabae85839e2af30d6c52

sha512=4ed2df0b7cbd80bd6e29bd8fee9d2dacd9379ad0f4ff142bd8e16ade3f1507f6cc7cbe4c614943b8feb8fa4705935695cb458606b0da813dbf255b1e566a43cf

A collection of non-overlapping regions (e.g. a set of CpG islands)

Sourcetype t

Sourceval empty : t

Sourceval add : t -> location -> t

Sourceval inter : t -> t -> t

Sourceval union : t -> t -> t

Sourceval diff : t -> t -> t

Sourceval size : t -> int

Sourceval intersects : t -> location -> bool

intersects loc sel returns true if loc has a non-empty intersection with sel, and false otherwise.

Sourceval overlap : t -> location -> int

Sourceval to_stream : t -> location Stream.t

Sourceval of_stream : location Stream.t -> t

of_stream e computes a selection (i.e. a set of non overlapping locations) as the union of the locations contained in e