package biocaml

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The OCaml Bioinformatics Library

Install

Dune Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

Maintainers

B

biocaml@googlegroups.com

Sources

v0.11.0.tar.gz

md5=486aeb3e552dabae85839e2af30d6c52

sha512=4ed2df0b7cbd80bd6e29bd8fee9d2dacd9379ad0f4ff142bd8e16ade3f1507f6cc7cbe4c614943b8feb8fa4705935695cb458606b0da813dbf255b1e566a43cf

doc/biocaml.unix/Biocaml_unix/GenomeMap/Make/LSet/index.html

Module `Make.LSet`Source

A set of locations (e.g. a set of gene loci)

Sourcetype t

Sourceval to_stream : t -> location Stream.t

Sourceval of_stream : location Stream.t -> t

Sourceval intersects : t -> location -> bool

intersects lset loc returns true if loc has a non-empty intersection with one of the locations in lset, and returns false otherwise

Sourceval closest : t -> location -> (location * int) option

closest lset loc returns the location in lset that is the closest to loc, along with the actual (minimal) distance. Returns None if there is no location in lset that comes from the same chromosome than loc.

Sourceval intersecting_elems : t -> location -> location Stream.t

intersecting_elems lset loc returns a stream of all locations in lset that intersect loc.