package biocaml

You can search for identifiers within the package.

in-package search v0.2.0

The OCaml Bioinformatics Library

Install

Dune Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

Maintainers

B

biocaml@googlegroups.com

Sources

v0.10.0.tar.gz

md5=497e3f2f7128a6ca347d66848da38a3d

sha512=4a76ebbafda3bc944afaff40d69791dfe153a0638ef5d7e6e1bc962b7f991d9545cd0af2d7930b39f8b31dbf067d0603cfa03d9b7a49396ab1ae452df47fd1f3

doc/biocaml.unix/Biocaml_unix/Track/Transform/index.html

Module `Track.Transform`

Low-level transforms.

val string_to_string_content : 
  ?filename:string ->
  unit ->
  (string, ([ t | string content ], [> Error.parsing ]) Core_kernel.Result.t)
    Tfxm.t

Create a parser that gets the "track", comment, and "browser" lines and puts the other lines in `content _.

val string_content_to_string : 
  ?add_content_new_line:bool ->
  unit ->
  ([ t | string content ], string) Tfxm.t

Create a printer for track files containing `content line lines.

val string_to_wig : 
  ?filename:string ->
  unit ->
  (string,
    ([ t | Wig.item ], [> Error.parsing | Wig.Error.parsing ])
      Core_kernel.Result.t)
    Tfxm.t

Create a composite parser for UCSC WIG files.

val wig_to_string : unit -> ([ t | Wig.item ], string) Tfxm.t

Create a printer for track files containing WIG lines.

val string_to_gff : 
  ?filename:string ->
  tags:Gff.Tags.t ->
  unit ->
  (string,
    ([ t | Gff.item ], [> Error.parsing | Gff.Error.parsing ])
      Core_kernel.Result.t)
    Tfxm.t

Create a composite parser for UCSC GFF files.

val gff_to_string : 
  tags:Gff.Tags.t ->
  unit ->
  ([ t | Gff.item ], string) Tfxm.t

Create a printer for track files containing GFF lines.

val string_to_bed : 
  ?filename:string ->
  ?more_columns:Bed.parsing_spec ->
  unit ->
  (string,
    ([ t | Bed.item content ], [> Error.parsing | Bed.Error.parsing ])
      Core_kernel.Result.t)
    Tfxm.t

Create a composite parser for UCSC Bed(Graph) files.

val bed_to_string : unit -> ([ t | Bed.item content ], string) Tfxm.t

Create a printer for track files containing Bed(Graph) lines.