package biocaml

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in-package search v0.2.0

The OCaml Bioinformatics Library

Install

md5=497e3f2f7128a6ca347d66848da38a3d

sha512=4a76ebbafda3bc944afaff40d69791dfe153a0638ef5d7e6e1bc962b7f991d9545cd0af2d7930b39f8b31dbf067d0603cfa03d9b7a49396ab1ae452df47fd1f3

Sequence Graph (SGR) files.

type t

exception Bad of string

val of_channel : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  Core_kernel.In_channel.t ->
  t

val of_file : ?chr_map:(string -> string) -> ?increment_bp:int -> string -> t

val of_list : (string * int * float) list -> t

val of_chr_lists : (string * (int * float) list) list -> t

val to_channel : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  t ->
  Core_kernel.Out_channel.t ->
  unit

val to_file : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  t ->
  string ->
  unit

Items will be printed in ascending order by (chr,coord).

val to_list : t -> (string * int * float) list

Items will be returned in ascending order by (chr,coord).

val to_chr_lists : t -> (string * (int * float) list) list

Outer list will be in ascending order by chr, and inner lists will be in ascending order by coord.