package biocaml

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The OCaml Bioinformatics Library

Install

md5=497e3f2f7128a6ca347d66848da38a3d

sha512=4a76ebbafda3bc944afaff40d69791dfe153a0638ef5d7e6e1bc962b7f991d9545cd0af2d7930b39f8b31dbf067d0603cfa03d9b7a49396ab1ae452df47fd1f3

Read mzData files (mass spectrometry data format).

type vec =
  (float, Bigarray.float64_elt, Bigarray.fortran_layout) Bigarray.Array1.t

Vectors of 64 bits floats.

type int_vec =
  (int, Bigarray.int_elt, Bigarray.fortran_layout) Bigarray.Array1.t

Vectors of OCaml ints.

module Precursor : sig ... end

type spectrum = {

id : int;
(*
index of the spectrum in the file (starting with 1).
*)
mslevel : int;
(*
1: MS, 2: MS/MS,...
*)
precursor : Precursor.t list;
(*
List of precursors to the spectrum currently being described.
*)
mz : vec;
(*
m/z
*)
int : vec;
(*
intensities
*)
sup : (string * vec) list;
(*
Supplemental (name, arrays), if any
*)

}

Individual mass spectrum.

val of_file : string -> spectrum list

of_file fname returns the spectra contained in the file fname.