package biocaml

You can search for identifiers within the package.

in-package search v0.2.0

The OCaml Bioinformatics Library

Install

md5=497e3f2f7128a6ca347d66848da38a3d

sha512=4a76ebbafda3bc944afaff40d69791dfe153a0638ef5d7e6e1bc962b7f991d9545cd0af2d7930b39f8b31dbf067d0603cfa03d9b7a49396ab1ae452df47fd1f3

A collection of non-overlapping regions (e.g. a set of CpG islands)

type t

val empty : t

val add : t -> location -> t

val inter : t -> t -> t

val union : t -> t -> t

val diff : t -> t -> t

val size : t -> int

val intersects : t -> location -> bool

intersects loc sel returns true if loc has a non-empty intersection with sel, and false otherwise.

val overlap : t -> location -> int

val to_stream : t -> location Stream.t

val of_stream : location Stream.t -> t

of_stream e computes a selection (i.e. a set of non overlapping locations) as the union of the locations contained in e