package biocaml

You can search for identifiers within the package.

in-package search v0.2.0

The OCaml Bioinformatics Library

Install

md5=497e3f2f7128a6ca347d66848da38a3d

sha512=4a76ebbafda3bc944afaff40d69791dfe153a0638ef5d7e6e1bc962b7f991d9545cd0af2d7930b39f8b31dbf067d0603cfa03d9b7a49396ab1ae452df47fd1f3

type t = {

total : int;
qc_pass : int;
(*
not_passing_quality_controls returns false, assumed for all other counts
*)
single_reads : int;
(*
has_multiple_segments returns false
*)
read_pairs : int;
(*
has_multiple_segments and first_segment
*)
mapped_reads : int;
(*
!segment_unmapped and !secondary_alignment and !supplementary_alignment
*)
mapped_pairs : int;
(*
has_multiple_segments and first_segment and each_segment_properly_aligned and !secondary_alignment and !supplementary_alignment
*)

}

include Ppx_sexp_conv_lib.Sexpable.S with type t := t

val t_of_sexp : Sexplib0.Sexp.t -> t

val sexp_of_t : t -> Sexplib0.Sexp.t

val zero : t

val update0 : t -> Bam.Alignment0.t -> t Core_kernel.Or_error.t

val update : t -> Sam.alignment -> t

module Fragment_length_histogram : sig ... end

module Chr_histogram : sig ... end