package biocaml
The OCaml Bioinformatics Library
Install
Dune Dependency
Authors
Maintainers
Sources
v0.10.0.tar.gz
md5=497e3f2f7128a6ca347d66848da38a3d
sha512=4a76ebbafda3bc944afaff40d69791dfe153a0638ef5d7e6e1bc962b7f991d9545cd0af2d7930b39f8b31dbf067d0603cfa03d9b7a49396ab1ae452df47fd1f3
doc/biocaml.ez/Biocaml_ez/Lines/Transform/index.html
Module Lines.Transform
Transforms from/to Lines.item.
val string_to_item : unit -> (string, item) Biocaml_unix.Tfxm.tReturn a transform that converts a stream of arbitrary strings to a stream of lines. If the input terminates without a newline, the trailing string is still considered a line.
val group2 :
unit ->
(item, (item * item, [> `premature_end_of_input ]) Core_kernel.result)
Biocaml_unix.Tfxm.tReturn a transform that converts a stream of lines to a stream of pairs of lines. It is considered an error if input ends with an odd number of lines.
val item_to_string :
?buffer:[ `clear of int | `reset of int ] ->
unit ->
(item, string) Biocaml_unix.Tfxm.tReturn a transform that output Line.items to strings (in other words a buffer with the lines plus their end-of-line character).
val make :
?name:string ->
?filename:string ->
next:
(Buffer.t -> [ `not_ready | `output of ('b, 'errnext) Core_kernel.result ]) ->
on_error:
([ `next of 'errnext
| `incomplete_input of Biocaml_unix.Pos.t * string list * string option ] ->
'err) ->
unit ->
(string, ('b, 'err) Core_kernel.result) Biocaml_unix.Tfxm.tBuild a stoppable line-oriented parsing_buffer.
val make_merge_error :
?name:string ->
?filename:string ->
next:
(Buffer.t ->
[ `not_ready
| `output of
('a,
[> `incomplete_input of
Biocaml_unix.Pos.t * string list * string option ] as 'b)
Core_kernel.result ]) ->
unit ->
(string, ('a, 'b) Core_kernel.result) Biocaml_unix.Tfxm.tDo like make but merge `incomplete_input _ with the errors of ~next (which must be polymorphic variants).