package biocaml

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The OCaml Bioinformatics Library

Install

Dune Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

Maintainers

B

biocaml@googlegroups.com

Sources

v0.10.0.tar.gz

md5=497e3f2f7128a6ca347d66848da38a3d

sha512=4a76ebbafda3bc944afaff40d69791dfe153a0638ef5d7e6e1bc962b7f991d9545cd0af2d7930b39f8b31dbf067d0603cfa03d9b7a49396ab1ae452df47fd1f3

doc/biocaml.ez/Biocaml_ez/Fastq/index.html

Module `Biocaml_ez.Fastq`

type nonrec item = Biocaml_unix.Fastq.item

val split_name : string -> string * string option

val read : 
  Biocaml_unix.Future_unix.Reader.t ->
  Biocaml_unix.Fastq.item CFStream.Stream.t

val write : 
  Biocaml_unix.Future_unix.Writer.t ->
  Biocaml_unix.Fastq.item Biocaml_unix.Future_unix.Pipe.Reader.t ->
  unit Biocaml_unix.Future_unix.Deferred.t

val write_file : 
  ?perm:int ->
  ?append:bool ->
  string ->
  Biocaml_unix.Fastq.item Biocaml_unix.Future_unix.Pipe.Reader.t ->
  unit Biocaml_unix.Future_unix.Deferred.t

module Illumina : sig ... end

val item_to_string : Biocaml_unix.Fastq.item -> string

val name_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

val sequence_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

val comment_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

val qualities_of_line : 
  ?pos:Biocaml_unix.Pos.t ->
  ?sequence:string ->
  Biocaml_unix.Line.t ->
  string